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Parallel Computation of Non-Bonded Interactions in Drug Discovery: Nvidia GPUs vs. Intel Xeon Phi

Jianbin Fang, Ana Lucia Varbanescu, Baldomero Imbernon, Jose M. Cecilia, Horacio Perez-Sanchez

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Tags: Bioinformatics, Biology, CUDA, Electrostatics, Intel Xeon Phi, nVidia, Performance, Pharmaceuticals, Tesla K20

September 13, 2014 by hgpu

Parallel CYK Membership Test on GPUs

Kyoung-Hwan Kim, Sang-Min Choi, Hyein Lee, Ka Lok Man, Yo-Sub Han

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 560 Ti

September 13, 2014 by hgpu

Analysis of GPU-based convolution for acoustic wave propagation modeling with finite differences: Fortran to CUDA-C step-by-step

Makoto Sadahiro

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Tags: Acoustics, CUDA, Finite difference, Fortran, nVidia, Physics, Tesla K20, Thesis

September 13, 2014 by hgpu

Performance and Power Optimization of GPU Architectures for General-purpose Computing

Yue Wang

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Tags: Computer science, CUDA, GPGPU-sim, Heterogeneous systems, nVidia, Thesis

September 13, 2014 by hgpu

Characterization and Analysis of Dynamic Parallelism in Unstructured GPU Applications

Jin Wang, Sudhakar Yalamanchili

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Tags: Algorithms, Computer science, CUDA, Data parallelism, nVidia, nVidia GeForce GTX Titan, Tesla K20, Tesla K40

September 11, 2014 by hgpu

Parallelized Seeded Region Growing using CUDA

Seongjin Park, Jeongjin Lee, Hyunna Lee, Juneseuk Shin, Jinwook Seo, Kyoung Ho Lee, Yeong-Gil Shin, Bohyoung Kim

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Tags: Algorithms, Computer science, CUDA, HLSL, Medicine, nVidia, nVidia GeForce GTX 285

September 11, 2014 by hgpu

Enhancing R with Advanced Compilation Tools and Methods

Duncan Temple Lang

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Tags: Computer science, CUDA, Mathematical Software, nVidia, Programming Languages

September 11, 2014 by hgpu

Parallel Multi-dimensional Range Query Processing with R-Trees on GPU

Jinwoong Kim, Beomseok Nam

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Tags: Algorithms, Computer science, CUDA, Databases, Indexing, nVidia, Tesla M2090

September 9, 2014 by hgpu

Improvements to Physically Based Cloth Simulation

Tsz Ho Wong

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Tags: 3D Graphics and Realism, Collision detection, Computer science, CUDA, nVidia, nVidia GeForce GTX 470, nVidia GeForce GTX 780, Review, Thesis

September 9, 2014 by hgpu

A Reduction of the Elastic Net to Support Vector Machines with an Application to GPU Computing

Quan Zhou, Wenlin Chen, Shiji Song, Jacob R. Gardner, Kilian Q. Weinberger, Yixin Chen

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Tags: Algorithms, Biology, CUDA, Genetics, Machine learning, Neuroscience, nVidia, nVidia GeForce GTX Titan, Statistics

September 9, 2014 by hgpu

Professional CUDA C Programming

John Cheng, Max Grossman, Ty McKercher

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Tags: Algorithms, Book, Computer science, CUDA, Memory model, nVidia, Review

September 8, 2014 by hgpu

Document Classification Using KNN on GPU

S.G. Lade, Nikhil Vyawahare

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GT 520 M, Text mining

September 8, 2014 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

See all packages

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high performance computing on graphics processing units: hgpu.org

Programming

Parallel Computation of Non-Bonded Interactions in Drug Discovery: Nvidia GPUs vs. Intel Xeon Phi

Parallel CYK Membership Test on GPUs

Analysis of GPU-based convolution for acoustic wave propagation modeling with finite differences: Fortran to CUDA-C step-by-step

Performance and Power Optimization of GPU Architectures for General-purpose Computing

Characterization and Analysis of Dynamic Parallelism in Unstructured GPU Applications

Parallelized Seeded Region Growing using CUDA

Enhancing R with Advanced Compilation Tools and Methods

Parallel Multi-dimensional Range Query Processing with R-Trees on GPU

Improvements to Physically Based Cloth Simulation

A Reduction of the Elastic Net to Support Vector Machines with an Application to GPU Computing

Professional CUDA C Programming

Document Classification Using KNN on GPU

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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