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Optimizations in Bioinformatics using GPU Processing on Binary Data

Manuel Belmadani

Tags: Algorithms, Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 285

January 8, 2013 by hgpu

High Performance Multi-dimensional (2D/3D) FFT-Shift Implementation on Graphics Processing Units (GPUs)

Marwan Abdellah, Salah Saleh, Ayman Eldeib, Amr Shaarawi

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Tags: CUDA, FFT, nVidia, nVidia GeForce GTX 570, Rendering, Signal processing

January 8, 2013 by hgpu

Implementation of FDTD-Compatible Green’s Function on Heterogeneous CPU-GPU Parallel Processing System

Tomasz P. Stefanski

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Tags: CUDA, Electrodynamics, FDTD, Finite-difference time-domain, Heterogeneous systems, nVidia, nVidia GeForce GTX 680

January 8, 2013 by hgpu

Efficient Weighted Histogramming on GPUs with CUDA

Mo Xu, Ningyi Xu, Chunshui Zhao, Feng-Hsiung Hsu

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Tags: Computer science, CUDA, Data mining, Machine learning, nVidia, nVidia GeForce GTX 580

January 8, 2013 by hgpu

Distributed Massive Model Rendering

Revanth N R, P. J. Narayanan

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Tags: 3D Graphics and Realism, Computer science, CUDA, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce GTX 280, nVidia GeForce GTX 480, nVidia GeForce GTX 580, nVidia Quadro FX 3700 M, Rendering, Tesla C2050, Tesla C2070, Tesla S1070

January 8, 2013 by hgpu

GPU-Optimized Coarse-Grained MD Simulations of Protein and RNA Folding and Assembly

Andrew J. Proctor, Tyson J. Lipscomb, Anqi Zou, Joshua A. Anderson, Samuel S. Cho

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Tags: Bioinformatics, Biology, CUDA, Macromolecule, Molecular dynamics, nVidia, RNA, Tesla C2070

January 8, 2013 by hgpu

CUDA based iterative methods for linear systems

Bogdan Oancea

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Tags: Computer science, CUDA, Linear Algebra, nVidia, nVidia GeForce GTX 280

January 7, 2013 by hgpu

Performance comparison of gauss-Jordan elimination method using OpenMP and CUDA

Baha Sen, Nesrin Aydin Atasoy, Caner Ozcan

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Tags: Computer science, CUDA, nVidia, nVidia GeForce 9500 GT, OpenMP, Performance, Programming techniques

January 7, 2013 by hgpu

Numerical computations in Java with CUDA

Bogdan Oancea, Tudorel Andrei, Andreea Iluzia Iacob

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Tags: Computer science, CUBLAS, CUDA, Java, Linear Algebra, nVidia, nVidia GeForce 9500 GT

January 7, 2013 by hgpu

Interactive Refactoring for GPU Parallelization of Affine Loops

Kostadin Damevski, Madhan Muralimanohar

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Tags: Code generation, Computer science, CUDA, Heterogeneous systems, nVidia, nVidia Quadro FX 2000

January 7, 2013 by hgpu

High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms

George Teodoro, Tony Pan, Tahsin M. Kurc, Jun Kong, Lee A. D. Cooper, Norbert Podhorszki, Scott Klasky, Joel H. Saltz

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Tags: CUDA, GPU cluster, Image processing, Microscopy, nVidia, Prefetch, Tesla M2090

January 6, 2013 by hgpu

Approximate Subdivision Surface Evaluation in the Language of Linear Algebra

Michael Driscoll

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Tags: 3D Graphics and Realism, Computer science, CUDA, Image generation, Linear Algebra, nVidia, nVidia GeForce GTX 480, Sparse matrix

January 5, 2013 by hgpu

A Safety Report on GPT-5.2, Gemini 3 Pro, Qwen3-VL, Grok 4.1 Fast, Nano Banana Pro, and Seedream 4.5

DICE: Diffusion Large Language Models Excel at Generating CUDA Kernels

KernelGYM & Dr. Kernel: A distributed GPU environment and a collection of RL training methods to support RL for Kernel Generations

Dr. Kernel: Reinforcement Learning Done Right for Triton Kernel Generations

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

See all packages

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high performance computing on graphics processing units: hgpu.org

Programming

Optimizations in Bioinformatics using GPU Processing on Binary Data

High Performance Multi-dimensional (2D/3D) FFT-Shift Implementation on Graphics Processing Units (GPUs)

Implementation of FDTD-Compatible Green’s Function on Heterogeneous CPU-GPU Parallel Processing System

Efficient Weighted Histogramming on GPUs with CUDA

Distributed Massive Model Rendering

GPU-Optimized Coarse-Grained MD Simulations of Protein and RNA Folding and Assembly

CUDA based iterative methods for linear systems

Performance comparison of gauss-Jordan elimination method using OpenMP and CUDA

Numerical computations in Java with CUDA

Interactive Refactoring for GPU Parallelization of Affine Loops

High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms

Approximate Subdivision Surface Evaluation in the Language of Linear Algebra

Recent source codes

A Safety Report on GPT-5.2, Gemini 3 Pro, Qwen3-VL, Grok 4.1 Fast, Nano Banana Pro, and Seedream 4.5

DICE: Diffusion Large Language Models Excel at Generating CUDA Kernels

KernelGYM & Dr. Kernel: A distributed GPU environment and a collection of RL training methods to support RL for Kernel Generations

Vortex-Optimized Light-weight Toolchain (VOLT)

SciDef: Automated Definition Extraction from Scientific Literature

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

Most viewed papers (last 30 days)