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Poisson-Boltzmann model for protein-surface electrostatic interactions and grid-convergence study using the PyGBe code

Christopher D. Cooper, Lorena A. Barba

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Tags: Biomolecules, Boltzmann equation, Computational Physics, CUDA, Electrostatics, nVidia, Package, Physics, Poisson Boltzmann, Python, Tesla C2075

June 14, 2015 by hgpu

Practical Symbolic Execution Analysis and Methodology for GPU Programs

Peng Li

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Tags: Benchmarking, Computer science, CUDA, nVidia, nVidia GeForce GTX 480, Package, Thesis

June 10, 2015 by hgpu

Performance of a code migration for the simulation of supersonic ejector flow to SMP, MIC and GPU using OpenMP, OpenMP+LEO, and OpenACC directives

C. Couder-Castaneda, H. Barrios-Pina, I. Gitler, M. Arroyo

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Tags: Computer science, Fortran, Intel Xeon Phi, nVidia, OpenACC, OpenMP, Performance, Tesla C2070

June 10, 2015 by hgpu

A Pattern Specification and Optimizations Framework for Accelerating Scientific Computations on Heterogeneous Clusters

Linchuan Chen, Xin Huo, Gagan Agrawal

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Tags: Computer science, CUDA, Heterogeneous systems, MPI, nVidia, Tesla M2070

June 10, 2015 by hgpu

Sequential Monte Carlo Optimisation for Air Traffic Management

A.J. Eele, J.M. Maciejowski

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Tags: Algorithms, CUDA, Mathematics, nVidia, nVidia GeForce GTX 580, Optimization, Tesla C2070

June 10, 2015 by hgpu

Design and optimization of DBSCAN Algorithm based on CUDA

Bingchen Wang, Chenglong Zhang, Lei Song, Lianhe Zhao, Yu Dou, Zihao Yu

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Tags: Algorithms, Clustering, Computer science, CUDA, nVidia, Tesla K10

June 10, 2015 by hgpu

Improving OpenCL Programmability with the Heterogeneous Programming Library

Moises Vinas, Basilio B. Fraguela, Zeki Bozkus, Diego Andrade

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Tags: Computer science, Heterogeneous systems, Intel Xeon Phi, nVidia, OpenCL, Package, Tesla C2050

June 8, 2015 by hgpu

CGO: G: Intelligent Heuristic Construction with Active Learning

William F. Ogilvie, Pavlos Petoumenous, Zheng Wang, Hugh Leather

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Tags: Computer science, Machine learning, nVidia, nVidia GeForce GTX Titan, OpenCL, Optimization

June 8, 2015 by hgpu

Cryptanalysis of the McEliece Cryptosystem on GPGPUs

Louis Fogel, Hnin Pwint Phyu

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Tags: Computer science, CUDA, nVidia, Security, Tesla K20, Thesis

June 8, 2015 by hgpu

Bi-directional Path Tracing on GPU

Vilem Otte

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Tags: 3D Graphics and Realism, Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GT 720 M, nVidia GeForce GTX 580, Package, Raytracing, Rendering, Thesis

June 8, 2015 by hgpu

Faster R-CNN: Towards Real-Time Object Detection with Region Proposal Networks

Shaoqing Ren, Kaiming He, Ross Girshick, Jian Sun

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Tags: CNN, Computer science, Computer vision, CUDA, Deep learning, Machine learning, nVidia, Package, Tesla K40

June 7, 2015 by hgpu

Implementation of K-shortest Path Algorithm in GPU Using CUDA

Avadhesh Pratap Singh, Dhirendra Pratap Singh

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Tags: Bioinformatics, Biology, Computer science, CUDA, nVidia, Sequence alignment, Tesla C2075

June 7, 2015 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Poisson-Boltzmann model for protein-surface electrostatic interactions and grid-convergence study using the PyGBe code

Practical Symbolic Execution Analysis and Methodology for GPU Programs

Performance of a code migration for the simulation of supersonic ejector flow to SMP, MIC and GPU using OpenMP, OpenMP+LEO, and OpenACC directives

A Pattern Specification and Optimizations Framework for Accelerating Scientific Computations on Heterogeneous Clusters

Sequential Monte Carlo Optimisation for Air Traffic Management

Design and optimization of DBSCAN Algorithm based on CUDA

Improving OpenCL Programmability with the Heterogeneous Programming Library

CGO: G: Intelligent Heuristic Construction with Active Learning

Cryptanalysis of the McEliece Cryptosystem on GPGPUs

Bi-directional Path Tracing on GPU

Faster R-CNN: Towards Real-Time Object Detection with Region Proposal Networks

Implementation of K-shortest Path Algorithm in GPU Using CUDA

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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