high performance computing on graphics processing units: hgpu.org

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Adaptable particle-in-cell algorithms for graphical processing units

Viktor K. Decyk, Tajendra V. Singh

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Tags: CUDA, nVidia, Particle-in-cell methods, Physics, Presentation, Tesla C1060

January 26, 2011 by hgpu

Hierarchical Agglomerative Clustering Using Graphics Processor with Compute Unified Device Architecture

S. A. Arul Shalom, Manoranjan Dash, Minh Tue, Nithin Wilson

Tags: Computer science, CUDA, GPU cluster, nVidia

January 26, 2011 by hgpu

Simulating flows of incompressible and weakly compressible fluids on multicore hybrid computer systems

A. Davydov, B. Chetverushkin, E. Shil'nikov

Tags: Fluid dynamics, nVidia

January 26, 2011 by hgpu

Supercomputing with toys: harnessing the power of NVIDIA 8800GTX and playstation 3 for bioinformatics problem

Justin Wilson, Manhong Dai, Elvis Jakupovic, Stanley Watson, Fan Meng

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Tags: Bioinformatics, Cell processor, CUDA, nVidia, nVidia GeForce 8800 GTX, Performance, Playstation, RapidMind

January 26, 2011 by hgpu

Efficient Bayesian inference in stochastic chemical kinetic models using graphical processing units

Jarad Niemi, Matthew Wheeler

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Tags: Bayesian, Biology, Chemistry, CUDA, nVidia, Stochastic simulation, Tesla T10

January 26, 2011 by hgpu

Fast Schedulability Analysis Using Commodity Graphics Hardware

Jimin Feng, Samarjit Chakraborty, Bertil Schmidt, Weiguo Liu, Unmesh D. Bordoloi

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Tags: Cg, Computer science, nVidia, nVidia GeForce 8800 GTX, OpenGL, Optimization

January 25, 2011 by hgpu

Molecular dynamics simulation of the supercooled Al melt on GPUs

Roman Bystryi, Andrey Kazennov, Igor Morozov, Vasily Pisarev, Vladimir Stegailov

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Tags: Molecular dynamics, nVidia, nVidia GeForce GTX 260, Physics

January 25, 2011 by hgpu

Simulation of stochastic processes using graphics hardware

Alison Barros, Euler Garcia, Rafael Morgado Silva

Tags: Langevin dynamics, nVidia, Physics, Stochastic simulation

January 25, 2011 by hgpu

Molecular dynamics simulations of the relaxation processes in the condensed matter on GPUs

I. V. Morozov, A. M. Kazennov, R. G. Bystryi, G. E. Norman, V. V. Pisarev, V. V. Stegailov

Tags: Molecular dynamics, nVidia, nVidia GeForce GTX 260, Physics

January 25, 2011 by hgpu

Fast Calculation of Electrostatic Potentials on the GPU or the ASIC MD-GRAPE-3

Tetsu Narumi, Kenji Yasuoka, Makoto Taiji, Francesco Zerbetto, Siegfried Hofinger

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Tags: Biomolecules, Biophysics, Chemistry, Molecular simulation, nVidia, nVidia GeForce GTX 280, Poisson Boltzmann

January 25, 2011 by hgpu

CUDASA: Compute Unified Device and Systems Architecture

M. Strengert, C. Muller, C. Dachsbacher, and T. Ertl

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Tags: Computer science, CUDA, GPU cluster, High-level Languages, nVidia, nVidia GeForce 8800 GT, nVidia GeForce 8800 GTX, nVidia Quadro FX 5600

January 24, 2011 by hgpu

Sparse regularization in MRI iterative reconstruction using GPUs

Yue Zhuo, Bradley Sutton, Xiao-Long Wu, Justin Haldar, Wen-mei Hwu, Zhipei Liang

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Tags: CUDA, Image processing, Image reconstruction, MRI, nVidia, nVidia GeForce GTX 280, Sparse matrix

January 24, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

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high performance computing on graphics processing units: hgpu.org

Adaptable particle-in-cell algorithms for graphical processing units

Hierarchical Agglomerative Clustering Using Graphics Processor with Compute Unified Device Architecture

Simulating flows of incompressible and weakly compressible fluids on multicore hybrid computer systems

Supercomputing with toys: harnessing the power of NVIDIA 8800GTX and playstation 3 for bioinformatics problem

Efficient Bayesian inference in stochastic chemical kinetic models using graphical processing units

Fast Schedulability Analysis Using Commodity Graphics Hardware

Molecular dynamics simulation of the supercooled Al melt on GPUs

Simulation of stochastic processes using graphics hardware

Molecular dynamics simulations of the relaxation processes in the condensed matter on GPUs

Fast Calculation of Electrostatic Potentials on the GPU or the ASIC MD-GRAPE-3

CUDASA: Compute Unified Device and Systems Architecture

Sparse regularization in MRI iterative reconstruction using GPUs

Recent source codes

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

Gaia AVU-GSR

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

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