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The Design and Implementation of a Verification Technique for GPU Kernels

Adam Betts, Nathan Chong, Alastair F. Donaldson, Jeroen Ketema, Shaz Qadeer, Paul Thomson, John Wickerson

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Tags: ARM, ATI, ATI Radeon HD 7970, Computer science, CUDA, nVidia, OpenCL, Package, Tesla C2050

April 4, 2015 by hgpu

High Performance Computing for solving large sparse systems. Optical Diffraction Tomography as a case of study

Gloria Ortega Lopez

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Tags: Computer science, CUDA, Differential equations, FEM, Finite difference, Finite element method, GPU cluster, Heterogeneous systems, Linear Algebra, nVidia, nVidia GeForce GTX 480, nVidia GeForce GTX 680, Package, Partial differential equations, PDEs, Sparse matrix, Tesla C2050, Tesla M2070, Tesla M2090, Thesis, Tomography

March 30, 2015 by hgpu

Real-time multi-view deconvolution

Benjamin Schmid, Jan Huisken

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Tags: Biology, CUDA, Microscopy, nVidia, nVidia GeForce GTX Titan, Package

March 30, 2015 by hgpu

Loo.py: From Fortran to performance via transformation and substitution rules

Andreas Klockner

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Tags: Code generation, Computer science, Fortran, OpenCL, Package, Python

March 28, 2015 by hgpu

Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space

Richard Wilton, Tamas Budavari, Ben Langmead, Sarah J. Wheelan, Steven L. Salzberg, Alexander S. Szalay

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Tags: Bioinformatics, Biology, CUDA, nVidia, Package, Sequence alignment, Tesla K20

March 28, 2015 by hgpu

Pseudorandom Numbers Generation for Monte Carlo Simulations on GPUs: OpenCL Approach

Vadim Demchik

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Tags: ATI, ATI Radeon HD 5870, ATI Radeon HD 6970, Computer science, Monte Carlo simulation, nVidia, nVidia GeForce GTX 560, nVidia GeForce GTX 560 M, nVidia GeForce GTX 780, OpenCL, Package, Pseudo-random number generators, Review, Tesla K40

March 25, 2015 by hgpu

Parallelization, Scalability, and Reproducibility in Next-Generation Sequencing Analysis

Johannes Koster

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Tags: Algorithms, Bayesian, Bioinformatics, Biology, Filtering, Next-Generation sequencing, nVidia, nVidia GeForce GTX 580, nVidia GeForce GTX 780, OpenCL, Package, Thesis

March 23, 2015 by hgpu

GPU Kernels for High-Speed 4-Bit Astrophysical Data Processing

Peter Klages, Kevin Bandura, Nolan Denman, Andre Recnik, Jonathan Sievers, Keith Vanderlinde

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Tags: AMD Radeon R9 280X, Astrophysics, ATI, Instrumentation and Methods for Astrophysics, OpenCL, Package

March 23, 2015 by hgpu

CSR5: An Efficient Storage Format for Cross-Platform Sparse Matrix-Vector Multiplication

Weifeng Liu, Brian Vinter

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Tags: Algorithms, AMD Radeon R9 290X, Benchmarking, Computer science, CUDA, Intel Xeon Phi, Mathematical Software, nVidia, nVidia GeForce GTX 980, OpenCL, Package, Performance, Sparse matrix

March 20, 2015 by hgpu

Implementation of a Practical Distributed Calculation System with Browsers and JavaScript, and Application to Distributed Deep Learning

Ken Miura, Tatsuya Harada

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Tags: Algorithms, Computer science, Java, Machine learning, Neural and Evolutionary Computing, Neural networks, nVidia, nVidia GeForce GTX Titan, OpenCL, Package, WebCL

March 20, 2015 by hgpu

Fast Sparse Matrix Multiplication on GPU

Lukas Polok, Viorela Ila, Pavel Smrz

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Tags: Algorithms, Computer science, CUDA, Linear Algebra, Matrix multiplication, nVidia, nVidia GeForce GTX 680, OpenCL, Package, Sorting, Sparse matrix, Tesla K40

March 18, 2015 by hgpu

HELIOS-K: An Ultrafast, Open-source Opacity Calculator for Radiative Transfer

Simon L. Grimm, Kevin Heng

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Tags: Astrophysics, CUDA, Earth and Planetary Astrophysics, nVidia, Package, Tesla K20

March 14, 2015 by hgpu

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

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high performance computing on graphics processing units: hgpu.org

The Design and Implementation of a Verification Technique for GPU Kernels

High Performance Computing for solving large sparse systems. Optical Diffraction Tomography as a case of study

Real-time multi-view deconvolution

Loo.py: From Fortran to performance via transformation and substitution rules

Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space

Pseudorandom Numbers Generation for Monte Carlo Simulations on GPUs: OpenCL Approach

Parallelization, Scalability, and Reproducibility in Next-Generation Sequencing Analysis

GPU Kernels for High-Speed 4-Bit Astrophysical Data Processing

CSR5: An Efficient Storage Format for Cross-Platform Sparse Matrix-Vector Multiplication

Implementation of a Practical Distributed Calculation System with Browsers and JavaScript, and Application to Distributed Deep Learning

Fast Sparse Matrix Multiplication on GPU

HELIOS-K: An Ultrafast, Open-source Opacity Calculator for Radiative Transfer

Recent source codes

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

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