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HORIZON: Accelerated General Relativistic Magnetohydrodynamics

Burkhard Zink

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Tags: Computational Physics, CUDA, General Relativity and Quantum Cosmology, GPU cluster, Gravitation, Instrumentation and Methods for Astrophysics, Magnetohydrodynamics, MPI, nVidia, nVidia GeForce GTX 580, Tesla C2070

February 28, 2011 by hgpu

Calculation by articificial compressibility method and virtual flux method on GPU

I. Tanno, K. Morinishi, N. Satofuka, Y. Watanabe

Tags: CUDA, Fluid dynamics, nVidia

February 28, 2011 by hgpu

STOCHSIMGPU: Parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB

Guido Klingbeil, Radek Erban, Mike Giles, Philip K. Maini

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce 8800, Package, Stochastic simulation

February 28, 2011 by hgpu

Automatic data movement and computation mapping for multi-level parallel architectures with explicitly managed memories

Muthu Manikandan Baskaran, Uday Bondhugula, Sriram Krishnamoorthy, J. Ramanujam, Atanas Rountev, P. Sadayappan

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Tags: Algorithms, Code generation, Compilers, Computer science, CUDA, nVidia, nVidia GeForce 8800 GTX, Optimization, Performance

February 28, 2011 by hgpu

Fast and Memory Efficient GPU-Based Rendering of Tensor Data

Mario Hlawitschka, Sebastian Eichelbaum, Gerik Scheuermann

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Tags: Computer science, OpenGL, Physics, Rendering, Visualization

February 27, 2011 by hgpu

Efficient hierarchical parallel genetic algorithms using grid computing

Dudy Lim, Yew-Soon Ong, Yaochu Jin, Bernhard Sendhoff, Bu-Sung Lee

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Tags: Algorithms, Computer science, Genetic programming, Grid

February 27, 2011 by hgpu

GPU ray casting of virtual globes

Patrick Cozzi, Frank Stoner

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Tags: 3D Graphics and Realism, Computer science, nVidia, nVidia GeForce 8400 GS, Rendering, Visualization

February 27, 2011 by hgpu

Data Mining and Machine Learning in Astronomy

Nicholas M. Ball, Robert J. Brunner

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Tags: Astrophysics, Cosmology and Extragalactic Astrophysics, CUDA, Data mining, Instrumentation and Methods for Astrophysics, nVidia, Review

February 27, 2011 by hgpu

Data Buffering Optimization Methods toward a Uniform Programming Interface for GPU-based Applications

Shinichi Yamagiwa, Leonel Sousa, Diogo Antao

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Tags: Computer science, DirectX, nVidia, nVidia GeForce 7400 GO, OpenGL, Programming techniques

February 27, 2011 by hgpu

A Method for Accelerating Bronchoscope Tracking Based on Image Registration by GPGPU

Takamasa Sugiura, Daisuke Deguchi, Takayuki Kitasaka, Kensaku Mori, Yasuhito Suenaga

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Tags: Computed tomography, CT, CUDA, Image registration, Medicine, nVidia, nVidia GeForce 8800 GTX

February 27, 2011 by hgpu

CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences

Edans Flavius O. Sandes, Alba Cristina M.A. de Melo

Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 280, Sequence alignment, Smith-Waterman algorithm

February 27, 2011 by hgpu

Size Matters: Space/Time Tradeoffs to Improve GPGPU Applications Performance

Abdullah Gharaibeh, Matei Ripeanu

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Short read mapping, Suffix trees

February 27, 2011 by hgpu

PROM: an open-source software framework to enhance the robustness and performance of predictive models against such changes during deployment

Enhancing Deployment-Time Predictive Model Robustness for Code Analysis and Optimization

DeepSpeed: a deep learning optimization library that makes distributed training and inference easy, efficient, and effective

Scalable Access-Pattern Aware I/O Acceleration and Multi-Tiered Data Management for HPC and AI Workloads

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

Analyzing the Performance Portability of SYCL across CPUs, GPUs, and Hybrid Systems with Protein Database Search

tdg-benchs: benchmarks used to test the performance of taskgraph

Leveraging the potential of task-based programming with OpenMP task graphs

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high performance computing on graphics processing units: hgpu.org

Applications

HORIZON: Accelerated General Relativistic Magnetohydrodynamics

Calculation by articificial compressibility method and virtual flux method on GPU

STOCHSIMGPU: Parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB

Automatic data movement and computation mapping for multi-level parallel architectures with explicitly managed memories

Fast and Memory Efficient GPU-Based Rendering of Tensor Data

Efficient hierarchical parallel genetic algorithms using grid computing

GPU ray casting of virtual globes

Data Mining and Machine Learning in Astronomy

Data Buffering Optimization Methods toward a Uniform Programming Interface for GPU-based Applications

A Method for Accelerating Bronchoscope Tracking Based on Image Registration by GPGPU

CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences

Size Matters: Space/Time Tradeoffs to Improve GPGPU Applications Performance

Recent source codes

PROM: an open-source software framework to enhance the robustness and performance of predictive models against such changes during deployment

DeepSpeed: a deep learning optimization library that makes distributed training and inference easy, efficient, and effective

HPX: a C++ Standard Library for Concurrency and Parallelism

TorchQC: Quantum Dynamics and Machine Learning

Matrix multiplication using Tensor Cores in CUDA

CPP Joules: Energy Measurement tool for CPP/CUDA programs

HPC-Coder-v2

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

tdg-benchs: benchmarks used to test the performance of taskgraph

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