high performance computing on graphics processing units: hgpu.org

Programming

Accelerating Protein Sequence Search in a Heterogeneous Computing System

Shucai Xiao, Heshan Lin, Wu-chun Feng

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Tags: Algorithms, Bioinformatics, Biology, BLAST, Databases, Heterogeneous systems, nVidia, Optimization, Tesla C1060, Tesla C2050

November 23, 2011 by hgpu

An efficient mixed-precision, hybrid CPU-GPU implementation of a fully implicit particle-in-cell algorithm

Guangye Chen, Luis Chacon, Daniel C. Barnes

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Tags: Algorithms, Computational Physics, CUDA, nVidia, nVidia GeForce GTX 580, Optimization, Particle-in-cell methods, Physics, Plasma physics

November 23, 2011 by hgpu

Application of GPGPU for Acceleration of Short DNA Sequence Alignment in Unipro UGENE Project

Konstantin Okonechinkov, German Grekhov, Konstantin Stepanyuk, Mikhail Fursov

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Tags: Algorithms, Bioinformatics, Biology, nVidia, OpenCL, Package, Sequence alignment, Tesla C1060, Tesla C2070

November 22, 2011 by hgpu

GPU-based Multi-start Local Search Algorithms

The Van Luong, Nouredine Melab, El-Ghazali Talbi

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Tags: Algorithms, Computer science, CUDA, Metaheuristics, nVidia, nVidia GeForce GTX 280, Optimization, Search

November 22, 2011 by hgpu

CT image reconstruction with half precision floating-point values

Clemens Maass, Sven Steckmann, Matthias Baer, Lars Hillebrand, Willi A. Kalender, Marc Kachelriess

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Tags: Algorithms, Computed tomography, CT, CUDA, Image processing, Image reconstruction, Larrabee, Medicine, nVidia, nVidia GeForce GTX 280

November 21, 2011 by hgpu

Efficient GPGPU-based parallel packet classification

Che-Lun Hung, Yaw-Ling Lin, Kuan-Ching Li, Hsiao-Hsi Wang, Shih-Wei Guo

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Tags: Algorithms, Computer science, CUDA, Filtering, Network communications, nVidia, nVidia GeForce GTS 450, Security

November 21, 2011 by hgpu

Conflux: Embedding Massively Parallel Semantics in a High-Level Programming Language

Eugene Burmako, Rauf Sadykhov

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Tags: Algorithms, Computer science, CUDA, High-level Languages, nVidia, Package

November 21, 2011 by hgpu

Graph-based Parallel Analysis of Large Analog Circuits Based on GPU Platforms

Jianan Lu, Zhigang Hao, Sheldon X.-D. Tan

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Tags: Algorithms, CAD, Computer science, CUDA, Electronic design automation, Graph theory, nVidia, Tesla S1070

November 21, 2011 by hgpu

Efficient Stack-less BVH Traversal for Ray Tracing

Michal Hapala, Tomas Davidovic, Ingo Wald, Vlastimil Havran, Philipp Slusallek

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Tags: 3D Graphics and Realism, Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GT 260, nVidia GeForce GTX 470, Raytracing

November 20, 2011 by hgpu

Implementing a Finite Difference-Based Real-time Sound Synthesizer using GPUs

Marc Sosnick, William Hsu

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Tags: Acoustics, Algorithms, Computer science, CUDA, Finite difference, nVidia, nVidia GeForce GT 330 M, Package, Physics

November 20, 2011 by hgpu

Spatial interpolation in massively parallel computing environments

Katharina Hennebohl, Marius Appel, Edzer Pebesma

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Tags: Algorithms, CUDA, Earth and Space Sciences, nVidia, nVidia Quadro FX 4800

November 20, 2011 by hgpu

Soft Error Resilient QR Factorization for Hybrid System

Peng Du, Piotr Luszczek, Stanimire Tomov, Jack Dongarra

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Tags: Algorithms, Computer science, CUDA, Factorization, Fault tolerance, Hybrid computing, Linear Algebra, nVidia, Tesla C2050, Tesla M2070

November 20, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

See all packages

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high performance computing on graphics processing units: hgpu.org

Programming

Accelerating Protein Sequence Search in a Heterogeneous Computing System

An efficient mixed-precision, hybrid CPU-GPU implementation of a fully implicit particle-in-cell algorithm

Application of GPGPU for Acceleration of Short DNA Sequence Alignment in Unipro UGENE Project

GPU-based Multi-start Local Search Algorithms

CT image reconstruction with half precision floating-point values

Efficient GPGPU-based parallel packet classification

Conflux: Embedding Massively Parallel Semantics in a High-Level Programming Language

Graph-based Parallel Analysis of Large Analog Circuits Based on GPU Platforms

Efficient Stack-less BVH Traversal for Ray Tracing

Implementing a Finite Difference-Based Real-time Sound Synthesizer using GPUs

Spatial interpolation in massively parallel computing environments

Soft Error Resilient QR Factorization for Hybrid System

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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