high performance computing on graphics processing units: hgpu.org

Applications

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Pairwise Sequence Alignment with Gaps with GPU

Thomas C. Carroll, Jude-Thaddeus Ojiaku, Prudence W.H. Wong

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Tags: Algorithms, Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 650, OpenCL, Sequence alignment

October 27, 2015 by hgpu

Compiling and Optimizing Java 8 Programs for GPU Execution

Kazuaki Ishizaki, Akihiro Hayashi, Gita Koblents, Vivek Sarkar

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Tags: Code generation, Compilers, Computer science, CUDA, Java, nVidia, OpenCL, Tesla K40

October 27, 2015 by ahayashi

Evaluation of the Stability and Performance of a Multi-Stage Riemann Solver in Relativistic Hydrodynamic Simulations

J. Sikorski, J. Porter-Sobieraj, D. Kikola, M. Slodkowski, P. Aszklar

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Tags: CUDA, Fluid dynamics, Nuclear Theory, nVidia

October 27, 2015 by hgpu

Machine-Learning-based Performance Heuristics for Runtime CPU/GPU Selection

Akihiro Hayashi, Kazuaki Ishizaki, Vivek Sarkar, Gita Koblents

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Tags: Code generation, Compilers, Computer science, CUDA, Java, Machine learning, nVidia, OpenCL, Tesla K40

October 27, 2015 by ahayashi

Overlap fermions on GPUs

Nigel Cundy, Weonjong Lee

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Tags: CUDA, High Energy Physics - Lattice, nVidia, nVidia GeForce GTX Titan, Physics

October 27, 2015 by hgpu

ZNN – A Fast and Scalable Algorithm for Training 3D Convolutional Networks on Multi-Core and Many-Core Shared Memory Machines

Aleksandar Zlateski, Kisuk Lee, H. Sebastian Seung

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Tags: CNN, Computer science, Computer vision, Deep learning, FFT, Intel Xeon Phi, Machine learning, Package

October 25, 2015 by hgpu

Execution of Compound Multi-Kernel OpenCL Computations in Multi-CPU/Multi-GPU Environments

Fabio Soldado, Fernando Alexandre, Herve Paulino

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Tags: ATI, ATI Radeon HD 7950, Computer science, Heterogeneous systems, OpenCL, Performance

October 25, 2015 by hgpu

Multi-GPU Distributed Parallel Bayesian Differential Topic Modelling

Aaron Q Li

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Tags: Algorithms, ATI, ATI Radeon HD 5870, Bayesian, Computer science, GPU cluster, Machine learning, NLP, nVidia, nVidia GeForce GTX 480, OpenCL, Thesis

October 25, 2015 by hgpu

Join Algorithms on GPUs: A Revisit After Seven Years

Ran Rui, Hao Li, Yi-Cheng Tu

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Tags: Algorithms, Computer science, CUDA, Databases, nVidia

October 25, 2015 by hgpu

Modern Gyrokinetic Particle-In-Cell Simulation of Fusion Plasmas on Top Supercomputers

Bei Wang, Stephane Ethier, William Tang, Khaled Ibrahim, Kamesh Madduri, Samuel Williams, Leonid Oliker

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Tags: CUDA, Heterogeneous systems, Intel Xeon Phi, Laplace and Poisson equation, nVidia, Particle-in-cell methods, Physics, Plasma physics, Poisson equation, Tesla K20

October 25, 2015 by hgpu

Sequential Code Parallelization for Multi-core Embedded Systems: A Survey of Models, Algorithms and Tools

Jorge Alberto Castro Godinez

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Tags: Computer science, Parallelization, Review, Thesis

October 22, 2015 by hgpu

A linguistic approach to concurrent, distributed, and adaptive programming across heterogeneous platforms

Paul Harvey

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Tags: Computer science, Heterogeneous systems, OpenCL, Thesis

October 22, 2015 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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high performance computing on graphics processing units: hgpu.org

Applications

Pairwise Sequence Alignment with Gaps with GPU

Compiling and Optimizing Java 8 Programs for GPU Execution

Evaluation of the Stability and Performance of a Multi-Stage Riemann Solver in Relativistic Hydrodynamic Simulations

Machine-Learning-based Performance Heuristics for Runtime CPU/GPU Selection

Overlap fermions on GPUs

ZNN – A Fast and Scalable Algorithm for Training 3D Convolutional Networks on Multi-Core and Many-Core Shared Memory Machines

Execution of Compound Multi-Kernel OpenCL Computations in Multi-CPU/Multi-GPU Environments

Multi-GPU Distributed Parallel Bayesian Differential Topic Modelling

Join Algorithms on GPUs: A Revisit After Seven Years

Modern Gyrokinetic Particle-In-Cell Simulation of Fusion Plasmas on Top Supercomputers

Sequential Code Parallelization for Multi-core Embedded Systems: A Survey of Models, Algorithms and Tools

A linguistic approach to concurrent, distributed, and adaptive programming across heterogeneous platforms

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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