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Large Scale DNA Sequence Alignment and Kernel Method Implemented with GPUs

Songwen Pei, Wenhao Wang, Gang Wei, Baifeng Wu

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Tags: Algorithms, ATI, ATI Radeon HD 4870, Bioinformatics, Biology, Brook, Sequence alignment

October 1, 2011 by hgpu

Interactive Soft Tissue for Surgical Simulation

Gregory S. Ruthenbeck

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Tags: Algorithms, CUDA, Medicine, nVidia, nVidia GeForce GTX 280, Surgical simulation, Thesis, Virtual reality

October 1, 2011 by hgpu

Image registration on GPU

Jeremy Coatelen, Yu Qi

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Tags: Algorithms, ATI, ATI Mobility Radeon HD 5850, Cloud, Image processing, Image registration, nVidia, OpenCL

October 1, 2011 by hgpu

Exploring The Latency and Bandwidth Tolerance of CUDA Applications

Gregory Diamos, Sudnya Padalikar

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Tags: Benchmarking, Computer science, CUDA, GPU cluster, Memory, nVidia, Performance, PTX, Tesla C1060

September 30, 2011 by hgpu

Architecture-Aware Mapping and Optimization on Heterogeneous Computing Systems

Mayank Daga

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Tags: ATI, ATI Radeon HD 5870, Computer science, CUDA, Heterogeneous systems, Molecular modeling, nVidia, nVidia GeForce GTX 280, OpenCL, Optimization, Tesla C2050, Thesis

September 30, 2011 by hgpu

Real-Time Handling of GPU Interrupts in LITMUSRT

Glenn A. Elliott, Chih-Hao Sun, and James H. Anderson

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 470, Operating systems

September 30, 2011 by hgpu

Enhancing Data Locality for Dynamic Simulations through Asynchronous Data Transformations and Adaptive Control

Bo Wu, Eddy Z. Zhang, Xipeng Shen

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Tags: Algorithms, Benchmarking, CMP, Computer science, CUDA, Heterogeneous systems, nVidia, Optimization, Tesla S1070

September 30, 2011 by hgpu

A PTX Code Generator for LLVM

Helge Rhodin

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Tags: Code generation, Compilers, Computer science, CUDA, nVidia, Optimization, PTX, Thesis, Virtualization

September 30, 2011 by hgpu

Adaptable Two-Dimension Sliding Windows on NVIDIA GPUs with Runtime Compilation

Nicholas Moore, Miriam Leeser, Laurie Smith King

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Tags: CUDA, Filtering, Image processing, nVidia, nVidia GeForce GTX 480

September 30, 2011 by hgpu

CBench: Analyzing Compute Performance for Modern NVIDIA and AMD GPUs

Varun Sampath

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Source codes

Tags: Algorithms, ATI, ATI Radeon HD 6870, Benchmarking, Computer science, CUDA, nVidia, OpenCL, Package, Tesla C2070

September 30, 2011 by hgpu

FATSEA-An Architectural Simulator for General Purpose Computing on GPUs

K.E. Ostby, J.L. Aragon, J.M. Garcia, M. Ujaldon

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Tags: Compilers, Computer science, CUDA, nVidia, Performance, PTX, Tesla C870

September 30, 2011 by hgpu

Translating GPU binaries to tiered SIMD architectures with Ocelot

Gregory Diamos, Andrew Kerr, Mukil Kesavan

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Tags: Algorithms, Cell processor, Compilers, Computer science, nVidia, PTX

September 30, 2011 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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high performance computing on graphics processing units: hgpu.org

Programming

Large Scale DNA Sequence Alignment and Kernel Method Implemented with GPUs

Interactive Soft Tissue for Surgical Simulation

Exploring The Latency and Bandwidth Tolerance of CUDA Applications

Architecture-Aware Mapping and Optimization on Heterogeneous Computing Systems

Real-Time Handling of GPU Interrupts in LITMUSRT

Enhancing Data Locality for Dynamic Simulations through Asynchronous Data Transformations and Adaptive Control

A PTX Code Generator for LLVM

Adaptable Two-Dimension Sliding Windows on NVIDIA GPUs with Runtime Compilation

CBench: Analyzing Compute Performance for Modern NVIDIA and AMD GPUs

FATSEA-An Architectural Simulator for General Purpose Computing on GPUs

Translating GPU binaries to tiered SIMD architectures with Ocelot

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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