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hgpu.org » Programming » OpenCL

OpenMM 8: Molecular Dynamics Simulation with Machine Learning Potentials

Peter Eastman, Raimondas Galvelis, Raúl P. Peláez, Charlles R. A. Abreu, Stephen E. Farr, Emilio Gallicchio, Anton Gorenko, Michael M. Henry, Frank Hu, Jing Huang, Andreas Krämer, Julien Michel, Joshua A. Mitchell, Vijay S. Pande, João PGLM Rodrigues, Jaime Rodriguez-Guerra, Andrew C. Simmonett, Jason Swails, Ivy Zhang, John D. Chodera, Gianni De Fabritiis, Thomas E. Markland

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Tags: AMD Radeon Pro V620, ATI, Chemical Physics, CUDA, HIP, Machine learning, Molecular dynamics, Molecular simulation, nVidia, nVidia A100, nVidia GeForce RTX 4080, OpenCL, Package, Physics

October 15, 2023 by hgpu

Strega: An HTTP Server for FPGAs

Fabio Maschi, Gustavo Alonso

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Tags: Computer science, FPGA, OpenCL, Package

October 15, 2023 by hgpu

Automated Buffer Sizing of Dataflow Applications in a High-Level Synthesis Workflow

Alexandre Honorat, Mickaël Dardaillon, Hugo Miomandre, Jean-François Nezan

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Tags: Code generation, Computer science, FPGA, HLS, OpenCL, Package, Performance

October 8, 2023 by hgpu

Impacts of Parallel Programming on Limited-Resource Hardware

Renato Barreto Hoffmann Filho

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Tags: Computer science, CUDA, nVidia, OpenCL, Programming techniques, Thesis

October 8, 2023 by hgpu

Experience Migrating OpenCL to SYCL: A Case Study on Searches for Potential Off-Target Sites of Cas9 RNA-Guided Endonucleases on AMD GPUs

Zheming Jin, Jeffrey S. Vetter

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Tags: AMD Radeon Instinct MI100, AMD Radeon Instinct MI60, AMD Radeon VII, ATI, ATI Radeon HD 7870, Bioinformatics, Biology, OpenCL, performance portability, RNA, SYCL

October 1, 2023 by hgpu

Beehive SPIR-V Toolkit: A Composable and Functional API for Runtime SPIR-V Code Generation

Juan Fumero Alfonso, György Rethy, Athanasios Stratikopoulos, Nikolaos Foutris, Christos-Efthymios Kotselidis

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Tags: Code generation, Computer science, Heterogeneous systems, Java, OpenCL, Package

October 1, 2023 by hgpu

Evaluating the performance portability of SYCL across CPUs and GPUs on bandwidth-bound applications

Istvan Z Reguly

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Tags: AMD Radeon Instinct MI250X, ATI, Benchmarking, cfd, Computer science, CUDA, Fluid dynamics, HIP, Intel, Intel Ponte Vecchio Max 1100, nVidia, nVidia A100, OpenCL, performance portability, SYCL

September 24, 2023 by hgpu

Improving the Efficiency of OpenCL Kernels through Pipes

Mostafa Eghbali Zarch, Michela Becchi

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Tags: Computer science, FPGA, OpenCL, Performance, performance portability

September 17, 2023 by hgpu

Unified Shared Memory: Friend or Foe?

Juan Fumero Alfonso, Florin-Gabriel Blanaru, Athanasios Stratikopoulos, Steve Dohrmann, Sandhya Viswanathan, Christos-Efthymios Kotselidis

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Tags: Code generation, Computer science, CUDA, FPGA, Heterogeneous systems, Java, Memory, nVidia, nVidia GeForce RTX 3070, OpenCL

September 17, 2023 by hgpu

Fortran High-Level Synthesis: Reducing the barriers to accelerating HPC codes on FPGAs

Gabriel Rodriguez-Canal, Nick Brown, Tim Dykes, Jessica R. Jones, Utz-Uwe Haus

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Tags: Computer science, Fortran, FPGA, HLS, HPC, OpenCL, Performance

September 6, 2023 by hgpu

PoCL-R: An Open Standard Based Offloading Layer for Heterogeneous Multi-Access Edge Computing with Server Side Scalability

Jan Solanti, Michal Babej, Julius Ikkala, Pekka Jääskeläinen

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Tags: Computer science, Distributed computing, Fluid dynamics, Heterogeneous systems, nVidia, nVidia GeForce RTX 2080 Ti, nVidia RTX A6000, OpenCL, Package, Rendering

September 6, 2023 by hgpu

Novel insights on atomic synchronization for sort-based group-by on GPUs

Bala Gurumurthy, David Broneske, Martin Schäler, Thilo Pionteck

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Tags: Computer science, Databases, Hashing, Heterogeneous systems, nVidia, nVidia A100, nVidia GeForce GTX 1050 Ti, nVidia GeForce RTX 2080 Ti, nVidia V100, OpenCL, Package, Sorting

August 28, 2023 by hgpu

WiLLM: An Open Wireless LLM Communication System

WiLLM: An Open Wireless LLM Communication System

Vcc: the Vulkan Clang Compiler

No More Shading Languages: Compiling C++ to Vulkan Shaders

hpcbench: A set of benchmarking utilities for biomolecular simulation tools

Engineering Supercomputing Platforms for Biomolecular Applications

HPCTransCompile: An AI Compiler Generated Dataset for High-Performance CUDA Transpilation and LLM Preliminary Exploration

HPCTransCompile: An AI Compiler Generated Dataset for High-Performance CUDA Transpilation and LLM Preliminary Exploration

chemtrain: Training Molecular Dynamics Potentials in JAX

chemtrain-deploy: A parallel and scalable framework for machine learning potentials in million-atom MD simulations

microSYCL: SYCL micro-benchmarks repository

Exploring SYCL as a Portability Layer for High-Performance Computing on CPUs

XaaS containers

Acceleration as a Service (XaaS) Source Containers

CASS: Cuda-Amd aSSembly

CASS: Nvidia to AMD Transpilation with Data, Models, and Benchmark

Cluser of smartphones for edge computing application using TensorFlow

Low-cost edge computing using upcycled smartphones

SYCL Container

Exploring SYCL for batched kernels with memory allocations

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