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Assessing opportunities of SYCL for biological sequence alignment on GPU-based systems

Manuel Costanzo, Enzo Rucci, Carlos García-Sanchez, Marcelo Naiouf, Manuel Prieto-Matías

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Tags: AMD Radeon RX 6700 XT, AMD Radeon RX Vega 6, ATI, Bioinformatics, Biology, Computational biology, CUDA, Heterogeneous systems, Intel Arc A770, Intel UHD 630, nVidia, nVidia GeForce GTX 1080, nVidia GeForce GTX 980, nVidia GeForce RTX 2070, nVidia GeForce RTX 3090, nVidia V100, oneAPI, Package, Sequence alignment, SYCL

February 25, 2024 by hgpu

Evaluation of FPGA-based high performance computing platforms

Martin Frick-Lundgren

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Tags: Computer science, FPGA, HPC, Intel, Intel UHD 630, Matrix multiplication, OpenCL, Package, SYCL, Thesis

November 27, 2023 by hgpu

Comparing Performance and Portability between CUDA and SYCL for Protein Database Search on NVIDIA, AMD, and Intel GPUs

Manuel Costanzo, Enzo Rucci, Carlos García Sánchez, Marcelo Naiouf, Manuel Prieto-Matías

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Tags: AMD Radeon RX 6700 XT, ATI, Bioinformatics, Biology, Computer science, CUDA, Intel, Intel UHD 630, nVidia, nVidia GeForce GTX 1080, nVidia GeForce GTX 980, nVidia GeForce RTX 2070, nVidia GeForce RTX 3070, nVidia GeForce RTX 3090, oneAPI, Programming Languages, Smith-Waterman algorithm, SYCL, Tesla V100

September 24, 2023 by hgpu

Redwood: Flexible and Portable Heterogeneous Tree Traversal Workloads

Yanwen Xu, Ang Li, Tyler Sorensen

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Tags: Benchmarking, Computer science, CUDA, FPGA, Heterogeneous systems, HLS, Intel UHD 630, nVidia, nVidia Jetson AGX Xavier, nVidia Jetson Nano, Package, Performance, SYCL

May 7, 2023 by hgpu

Optimization of massive data applications on heterogeneous architectures

José Carlos Romero Moreno

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Tags: Computer science, FPGA, Heterogeneous systems, Intel, Intel UHD 630, OpenCL, Package, SYCL, Thesis

February 5, 2023 by hgpu

SkyFlow: Heterogeneous streaming for skyline computation using FlowGraph and SYCL

Jose Carlos Romero, Angeles Navarro, Andres Rodrıguez, Rafael Asenjo

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Tags: Computer science, Heterogeneous systems, Intel, Intel UHD 630, OpenMP, SYCL

December 4, 2022 by hgpu

Assessing Opportunities of SYCL and Intel oneAPI for Biological Sequence Alignment

Manuel Costanzo, Enzo Rucci, Carlos García Sánchez, Marcelo Naiouf, Manuel Prieto-Matías

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Tags: Bioinformatics, Biology, Computational biology, Computer science, CUDA, Heterogeneous systems, Intel, Intel UHD 630, nVidia, nVidia GeForce GTX 1080, nVidia GeForce GTX 980, nVidia GeForce RTX 2070, nVidia GeForce RTX 3090, OpenCL, Sequence alignment, SYCL, Tesla V100

November 27, 2022 by hgpu

Performance Portability and Evaluation of Heterogeneous Components of SeisSol Targeted to Upcoming Intel HPC GPUs

Ludwig Kratzl

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Tags: Computer science, CUDA, FPGA, Heterogeneous systems, Intel, Intel UHD 630, MPI, nVidia, nVidia GeForce RTX 3090, OpenCL, Package, performance portability, SYCL, Thesis

August 29, 2021 by hgpu

Exploiting co-execution with oneAPI: heterogeneity from a modern perspective

Raúl Nozal, Jose Luis Bosque

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Tags: Computer science, Heterogeneous systems, Intel UHD 630, load balancing, SYCL

June 6, 2021 by hgpu

Acceleration of Intrusion Detection in Encrypted Network Traffic Using Heterogeneous Hardware

Eva Papadogiannaki, Sotiris Ioannidis

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Tags: Computer science, Filtering, Heterogeneous systems, Intel UHD 630, nVidia, nVidia GeForce GTX 980, OpenCL, Security

February 28, 2021 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Assessing opportunities of SYCL for biological sequence alignment on GPU-based systems

Evaluation of FPGA-based high performance computing platforms

Comparing Performance and Portability between CUDA and SYCL for Protein Database Search on NVIDIA, AMD, and Intel GPUs

Redwood: Flexible and Portable Heterogeneous Tree Traversal Workloads

Optimization of massive data applications on heterogeneous architectures

SkyFlow: Heterogeneous streaming for skyline computation using FlowGraph and SYCL

Assessing Opportunities of SYCL and Intel oneAPI for Biological Sequence Alignment

Performance Portability and Evaluation of Heterogeneous Components of SeisSol Targeted to Upcoming Intel HPC GPUs

Exploiting co-execution with oneAPI: heterogeneity from a modern perspective

Acceleration of Intrusion Detection in Encrypted Network Traffic Using Heterogeneous Hardware

Recent source codes

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Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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