high performance computing on graphics processing units: hgpu.org

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Fast gain-adaptive KLT tracking on the GPU

Christopher Zach, David Gallup, Jan-Michael Frahm

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Tags: Cg, Computer science, Computer vision, CUDA, GLSL, nVidia, nVidia GeForce 7950 GX2, nVidia GeForce 8400 GS, nVidia GeForce 8800 Ultra, OpenGL, Package, Video tracking

May 12, 2011 by hgpu

Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming

Jochen Blom, Tobias Jakobi, Daniel Doppmeier, Sebastian Jaenicke, Jorn Kalinowski, Jens Stoye, Alexander Goesmann

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Tags: Algorithms, Bioinformatics, Biology, CUDA, Next-Generation sequencing, nVidia, Package

May 10, 2011 by hgpu

GPULib: GPU Computing in High-Level Languages

Peter Messmer, Paul J. Mullowney, Brian E. Granger

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Tags: Computer science, CUDA, High-level Languages, nVidia, Package

May 9, 2011 by hgpu

GPU Based Fluid Animation over Elastic Surface Models

Bruno Barcellos S. Coutinho, Gilson Antonio Giraldi, Antonio L. Apolinario Jr.

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Tags: Computer science, Fluid simulation, Games, nVidia, nVidia GeForce 8800 GTX, Package, Real-time graphics, Rendering

May 9, 2011 by hgpu

K-nearest neighbor search: Fast GPU-based implementations and application to high-dimensional feature matching

Vincent Garcia, Eric Debreuve, Frank Nielsen, Michel Barlaud

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Tags: Computer vision, CUBLAS, CUDA, Image processing, Nearest neighbour, nVidia, nVidia Quadro FX 3700 M, Package, SIFT

May 5, 2011 by hgpu

GPU Implementation of Extended Gaussian Mixture Model for Background Subtraction

Vu Pham, Phong Vo, Vu Thanh Hung, Le Hoai Bac

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Tags: Computer science, Computer vision, CUDA, nVidia, nVidia GeForce 9600 GT, Package

May 3, 2011 by hgpu

High-Speed Private Information Retrieval Computation on GPU

Carlos Aguilar Melchor, Benoit Crespin, Philippe Gaborit, Vincent Jolivet, Pierre Rousseau

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Tags: Computer science, CUDA, Information Retrieval, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce 8800 GTX, nVidia GeForce 8800 Ultra, Package

April 22, 2011 by hgpu

Parallel calculation of the median and order statistics on GPUs with application to robust regression

Gleb Beliakov

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Tags: Algorithms, Computer science, CUDA, Data Structures and Algorithms, Numerical Analysis, nVidia, Package, Tesla C2050

April 19, 2011 by hgpu

CUDA-BLASTP: Accelerating BLASTP on CUDA-Enabled Graphics Hardware

Weiguo Liu, Bertil Schmidt, Wolfgang Muller-Wittig

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Tags: Bioinformatics, Biology, BLAST, CUDA, nVidia, nVidia GeForce GTX 295, Package, Sequence alignment

April 18, 2011 by hgpu

CULA: hybrid GPU accelerated linear algebra routines

John R. Humphrey, Daniel K. Price, Kyle E. Spagnoli, Aaron L. Paolini, Eric J. Kelmelis

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Tags: Computer science, CUDA, CULA, Linear Algebra, nVidia, Package, Tesla C1060

April 11, 2011 by hgpu

Exact and complete short read alignment to microbial genomes using GPU programming

Jochen Blom, Tobias Jakobi, Daniel Doppmeier, Sebastian Jaenicke, Jorn Kalinowski, Jens Stoye, Alexander Goesmann

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Tags: Bioinformatics, Biology, CUDA, Next-Generation sequencing, nVidia, nVidia GeForce GTX 280, Package

April 11, 2011 by hgpu

DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI

Yongchao Liu, Bertil Schmidt, Douglas Maskell

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Tags: Bioinformatics, Biology, CUDA, MPI, Next-Generation sequencing, nVidia, OpenMP, Package, Tesla S1070

April 11, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Fast gain-adaptive KLT tracking on the GPU

Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming

GPULib: GPU Computing in High-Level Languages

GPU Based Fluid Animation over Elastic Surface Models

K-nearest neighbor search: Fast GPU-based implementations and application to high-dimensional feature matching

GPU Implementation of Extended Gaussian Mixture Model for Background Subtraction

High-Speed Private Information Retrieval Computation on GPU

Parallel calculation of the median and order statistics on GPUs with application to robust regression

CUDA-BLASTP: Accelerating BLASTP on CUDA-Enabled Graphics Hardware

CULA: hybrid GPU accelerated linear algebra routines

Exact and complete short read alignment to microbial genomes using GPU programming

DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI

Recent source codes

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Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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