high performance computing on graphics processing units: hgpu.org

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Real-world comparison of CPU and GPU implementations of SNPrank: a network analysis tool for GWAS

Nicholas A. Davis, Ahwan Pandey, B. A. McKinney

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Tags: Bioinformatics, Biology, CUDA, Genetics, Medicine, nVidia, Package, Tesla M1060

December 13, 2010 by hgpu

SWPS3 – fast multi-threaded vectorized Smith-Waterman for IBM Cell/B.E. and x86/SSE2

Adam Szalkowski, Christian Ledergerber, Philipp Kraehenbuehl, Christophe Dessimoz

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Tags: Biology, Cell processor, CUDA, nVidia, nVidia GeForce 8800 GTX, Optimization, Package, Sequence alignment, Smith-Waterman algorithm

December 12, 2010 by hgpu

Volume rendering visualization of 3D spherical mantle convection with an unstructured mesh

Shi Chen, Huai Zhang, David Yuen, Shuxia Zhang, Jian Zhang, Yaolin Shi

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Tags: Earth and Space Sciences, Geoscience, nVidia, nVidia GeForce 7800 GTX, OpenGL, Package, Visualization

December 12, 2010 by hgpu

MCUDA: An Efficient Implementation of CUDA Kernels for Multi-core CPUs

John Stratton, Sam Stone, Wen-Mei Hwu

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Tags: Computer science, CUDA, High-level Languages, nVidia, Package

December 12, 2010 by hgpu

Parallel computing with graphics processing units for high-speed Monte Carlo simulation of photon migration

Erik Alerstam, Tomas Svensson, Stefan A. Engels

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Tags: CUDA, Monte Carlo simulation, nVidia, nVidia GeForce 8800 GT, Optics, Package, Physics

December 10, 2010 by hgpu

GPU-MEME: Using Graphics Hardware to Accelerate Motif Finding in DNA Sequences

Chen Chen, Bertil Schmidt, Liu Weiguo, Wolfgang Muller-Wittig

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Tags: Bioinformatics, Biology, GLSL, nVidia, nVidia GeForce 8800 GTX, OpenGL, Package, Pattern recognition

December 6, 2010 by hgpu

Real-Time Visibility-Based Fusion of Depth Maps

P. Merrell, A. Akbarzadeh, Liang Wang, P. Mordohai, J. M. Frahm, Ruigang Yang, D. Nister, M. Pollefeys

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Tags: Cg, Computer science, Computer vision, nVidia, nVidia GeForce 8800 GTX, OpenGL, Package, Video tracking

December 6, 2010 by hgpu

An adaptive framework for visualizing unstructured grids with time-varying scalar fields

F. Bernardon, S. Callahan, J. Comba, C. Silva

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Tags: Computer science, nVidia, nVidia GeForce 7800 GTX, Package, Rendering, Visualization

December 5, 2010 by hgpu

GPUQP: query co-processing using graphics processors

Rui Fang, Bingsheng He, Mian Lu, Ke Yang, Naga K. Govindaraju, Qiong Luo, Pedro V. Sander

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Tags: Algorithms, Computer science, CUDA, Databases, nVidia, Package, Review

December 4, 2010 by hgpu

GPU Floating-Point Paranoia

Karl E. Hillesland, Anselmo Lastra

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Tags: Algorithms, Cg, Computer science, Extended precision, nVidia, Package

December 3, 2010 by hgpu

Fast computation of generalized Voronoi diagrams using graphics hardware

Kenneth Hoff, John Keyser, Ming Lin, Dinesh Manocha, Tim Culver

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Tags: Computer science, Image generation, OpenGL, Package, Rasterization, Voronoi diagram

December 1, 2010 by hgpu

GPU-BLAST: Using graphics processors to accelerate protein sequence alignment

Panagiotis D. Vouzis, Nikolaos V. Sahinidis

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Tags: Bioinformatics, Biology, BLAST, CUDA, nVidia, Package, Sequence alignment, Tesla C2050

November 30, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Real-world comparison of CPU and GPU implementations of SNPrank: a network analysis tool for GWAS

SWPS3 – fast multi-threaded vectorized Smith-Waterman for IBM Cell/B.E. and x86/SSE2

Volume rendering visualization of 3D spherical mantle convection with an unstructured mesh

MCUDA: An Efficient Implementation of CUDA Kernels for Multi-core CPUs

Parallel computing with graphics processing units for high-speed Monte Carlo simulation of photon migration

GPU-MEME: Using Graphics Hardware to Accelerate Motif Finding in DNA Sequences

Real-Time Visibility-Based Fusion of Depth Maps

An adaptive framework for visualizing unstructured grids with time-varying scalar fields

GPUQP: query co-processing using graphics processors

GPU Floating-Point Paranoia

Fast computation of generalized Voronoi diagrams using graphics hardware

GPU-BLAST: Using graphics processors to accelerate protein sequence alignment

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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