high performance computing on graphics processing units: hgpu.org

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Kernel Fusion: An Effective Method for Better Power Efficiency on Multithreaded GPU

Guibin Wang, YiSong Lin, Wei Yi

Tags: Computer science, CUDA, Energy-efficient computing, nVidia

April 9, 2011 by hgpu

Data-parallel algorithms for large-scale real-time simulation of the cellular potts model on graphics processing units

Jose Juan Tapia, Roshan D'Souza

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Tags: Biophysics, CUDA, Data Structures and Algorithms, nVidia, nVidia GeForce GTX 280, OpenGL, Physics, Programming techniques

April 9, 2011 by hgpu

A Parallel Gibbs Sampling Algorithm for Motif Finding on GPU

Linbin Yu, Yun Xu

Tags: Bioinformatics, Biology, CUDA, nVidia, Sequence matching

April 9, 2011 by hgpu

Parallel Dense Gauss-Seidel Algorithm on Many-Core Processors

H. Courtecuisse, J. Allard

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Tags: Algorithms, Computer science, CUDA, Medicine, nVidia, nVidia GeForce GTX 280, Package, Physics-based simulation, Surgical simulation

April 8, 2011 by hgpu

Optimize or Wait? Using llc Fast-Prototyping Tool to Evaluate CUDA Optimizations

Ruyman Reyes, Francisco de Sande

Tags: Computer science, CUDA, nVidia, Optimization

April 8, 2011 by hgpu

Support Vector Machines on GPU with Sparse Matrix Format

Tsung-Kai Lin, Shao-Yi Chien

Tags: Computer science, Machine learning, nVidia, nVidia GeForce GTX 470

April 8, 2011 by hgpu

High-Speed Implementations of Block Cipher ARIA Using Graphics Processing Units

Yongjin Yeom, Yongkuk Cho, Moti Yung

Tags: Block Ciphers, Computer science, CUDA, Hardware Architecture, nVidia, nVidia GeForce 8800 GTS, OpenGL, Security

April 8, 2011 by hgpu

Record Setting Software Implementation of DES Using CUDA

G. Agosta, A. Barenghi, F. De Santis, G. Pelosi

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 250, nVidia GeForce GTX 260, nVidia GeForce GTX 275, nVidia GeForce GTX 285, nVidia GeForce GTX 295, Security

April 8, 2011 by hgpu

On accelerating iterative algorithms with CUDA: A case study on Conditional Random Fields training algorithm for biological sequence alignment

Zhihui Du, Zhaoming Yin, Wenjie Liu, D. Bader

Tags: Bioinformatics, Biology, CUDA, nVidia, Sequence alignment

April 8, 2011 by hgpu

A Comparative Study on ASIC, FPGAs, GPUs and General Purpose Processors in the O(N^2) Gravitational N-body Simulation

Tsuyoshi Hamada, Khaled Benkrid, Keigo Nitadori, Makoto Taiji

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Tags: Astrophysics, Cosmology, FPGA, N-body simulation, nVidia, nVidia GeForce 8800 GTX, nVidia GeForce 9800 GX2, Physics

April 8, 2011 by hgpu

Program Optimization of Array-Intensive SPEC2k Benchmarks on Multithreaded GPU Using CUDA and Brook+

Guibin Wang, Tao Tang, Xudong Fang, Xiaoguang Ren

Tags: Benchmarking, Brook, Computer science, CUDA, nVidia, Performance

April 8, 2011 by hgpu

CANSCID-CUDA

Michael Steffen, Veerendra Allada, Phillip Jones and Joseph Zambreno

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Tags: Computer science, CUDA, nVidia, Python, String matching, Tesla

April 8, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

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high performance computing on graphics processing units: hgpu.org

Kernel Fusion: An Effective Method for Better Power Efficiency on Multithreaded GPU

Data-parallel algorithms for large-scale real-time simulation of the cellular potts model on graphics processing units

A Parallel Gibbs Sampling Algorithm for Motif Finding on GPU

Parallel Dense Gauss-Seidel Algorithm on Many-Core Processors

Optimize or Wait? Using llc Fast-Prototyping Tool to Evaluate CUDA Optimizations

Support Vector Machines on GPU with Sparse Matrix Format

High-Speed Implementations of Block Cipher ARIA Using Graphics Processing Units

Record Setting Software Implementation of DES Using CUDA

On accelerating iterative algorithms with CUDA: A case study on Conditional Random Fields training algorithm for biological sequence alignment

A Comparative Study on ASIC, FPGAs, GPUs and General Purpose Processors in the O(N^2) Gravitational N-body Simulation

Program Optimization of Array-Intensive SPEC2k Benchmarks on Multithreaded GPU Using CUDA and Brook+

CANSCID-CUDA

Recent source codes

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

Gaia AVU-GSR

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

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