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Assessing Opportunities of SYCL and Intel oneAPI for Biological Sequence Alignment

Manuel Costanzo, Enzo Rucci, Carlos García Sánchez, Marcelo Naiouf, Manuel Prieto-Matías

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Tags: Bioinformatics, Biology, Computational biology, Computer science, CUDA, Heterogeneous systems, Intel, Intel UHD 630, nVidia, nVidia GeForce GTX 1080, nVidia GeForce GTX 980, nVidia GeForce RTX 2070, nVidia GeForce RTX 3090, OpenCL, Sequence alignment, SYCL, Tesla V100

November 27, 2022 by hgpu

Challenges and Techniques for Transparent Acceleration of Unmodified Big Data Applications

Maria Nektaria Xekalaki

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Tags: Benchmarking, Computer science, CUDA, FPGA, Heterogeneous systems, Java, nVidia, nVidia GeForce GTX 1060, nVidia Quadro GP100, OpenCL, Package, Performance, Tesla V100, Thesis

November 20, 2022 by hgpu

Going green: optimizing GPUs for energy efficiency through model-steered auto-tuning

Richard Schoonhoven, Bram Veenboer, Ben van Werkhoven, Kees Joost Batenburg

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Tags: Computer science, CUDA, Energy-efficient computing, nVidia, nVidia RTX A4000, OpenCL, Package, Tesla A100

November 20, 2022 by hgpu

TorchOpt: An Efficient Library for Differentiable Optimization

Jie Ren, Xidong Feng, Bo Liu, Xuehai Pan, Yao Fu, Luo Mai, Yaodong Yang

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Tags: Computer science, CUDA, Deep learning, Mathematical Software, nVidia, OpenMP, Package, PyTorch

November 20, 2022 by hgpu

Capturing the Memory Topology of GPUs

Dominik Größler

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Tags: Benchmarking, Computer science, CUDA, nVidia, nVidia A100, nVidia GeForce 840 M, nVidia GeForce RTX 2080 Ti, nVidia Quadro P 6000, Package, Performance, PTX, Tesla K20, Tesla V100, Thesis

November 13, 2022 by hgpu

A Study on Neural-based Code Summarization in Low-resource Settings

Yang He

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Tags: Computer science, CUDA, Deep learning, nVidia, PyTorch, Software Engineering, Tesla V100, Thesis

November 13, 2022 by hgpu

iGniter: Interference-Aware GPU Resource Provisioning for Predictable DNN Inference in the Cloud

Fei Xu, Jianian Xu, Jiabin Chen, Li Chen, Ruitao Shang, Zhi Zhou, Fangming Liu

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Tags: Cloud, Computer science, CUDA, Deep learning, Neural networks, nVidia, Package, Tesla V100

November 13, 2022 by hgpu

Enabling Data Movement and Computation Pipelining in Deep Learning Compiler

Guyue Huang, Yang Bai, Liu Liu, Yuke Wang, Bei Yu, Yufei Ding, Yuan Xie

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Tags: Computer science, CUDA, Deep learning, nVidia, nVidia A100

November 6, 2022 by hgpu

Using scheduling entropy amplification in CUDA/OpenMP code to exhibit non-reproducibility issues

David Defour

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Tags: Computer science, CUDA, Floating point error, nVidia, nVidia GeForce RTX 2060, OpenMP

November 6, 2022 by hgpu

A systematic performance study of the parallel programming framework SkePU 3 using HPC-benchmarks

Erik Tedhamre

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Tags: Benchmarking, Computer science, CUDA, HPC, nVidia, OpenCL, OpenMP, Package, Performance

October 30, 2022 by hgpu

Benchmarking GPU and TPU Performance with Graph Neural Networks

Xiangyang Ju, Yunsong Wang, Daniel Murnane, Nicholas Choma, Steven Farrell, Paolo Calafiura

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Tags: Artificial intelligence, Benchmarking, Computer science, CUDA, Deep learning, Machine learning, Neural networks, nVidia, nVidia A100, Pattern recognition, Tesla V100, TPU

October 30, 2022 by hgpu

gSuite: A Flexible and Framework Independent Benchmark Suite for Graph Neural Network Inference on GPUs

Taha Tekdoğan, Serkan Göktaş, Ayse Yilmazer-Metin

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Tags: Benchmarking, Computer science, CUDA, Machine learning, Neural networks, nVidia, Performance, Tesla V100

October 30, 2022 by hgpu

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

BoltzGen:Toward Universal Binder Design

CUDA-L2: Surpassing cuBLAS Performance for Matrix Multiplication through Reinforcement Learning

cuPilot: A Strategy-Coordinated Multi-agent Framework for CUDA Kernel Evolution

MATLAB Tensor Core models

Accurate Models of NVIDIA Tensor Cores

TritonForge: Transform PyTorch Operations into Optimized GPU Kernels with LLMs

TritonForge: Profiling-Guided Framework for Automated Triton Kernel Optimization

RLTune: Hybrid Learning and Optimization-Based Dynamic Scheduling for DL Workloads on Heterogeneous GPU Clusters

Hybrid Learning and Optimization-Based Dynamic Scheduling for DL Workloads on Heterogeneous GPU Clusters

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high performance computing on graphics processing units: hgpu.org

Assessing Opportunities of SYCL and Intel oneAPI for Biological Sequence Alignment

Challenges and Techniques for Transparent Acceleration of Unmodified Big Data Applications

Going green: optimizing GPUs for energy efficiency through model-steered auto-tuning

TorchOpt: An Efficient Library for Differentiable Optimization

Capturing the Memory Topology of GPUs

A Study on Neural-based Code Summarization in Low-resource Settings

Enabling Data Movement and Computation Pipelining in Deep Learning Compiler

Using scheduling entropy amplification in CUDA/OpenMP code to exhibit non-reproducibility issues

A systematic performance study of the parallel programming framework SkePU 3 using HPC-benchmarks

Benchmarking GPU and TPU Performance with Graph Neural Networks

gSuite: A Flexible and Framework Independent Benchmark Suite for Graph Neural Network Inference on GPUs

Recent source codes

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

BoltzGen:Toward Universal Binder Design

CUDA-L2: Surpassing cuBLAS Performance for Matrix Multiplication through Reinforcement Learning

cuPilot: A Strategy-Coordinated Multi-agent Framework for CUDA Kernel Evolution

MATLAB Tensor Core models

TritonForge: Transform PyTorch Operations into Optimized GPU Kernels with LLMs

RLTune: Hybrid Learning and Optimization-Based Dynamic Scheduling for DL Workloads on Heterogeneous GPU Clusters

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