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Alexander Ross Mace
Acentrosomal microtubules are not bound to a microtubule organising centre yet are still able to form ordered arrays. Two clear examples of this behaviour are the acentrosomal apico-basal (side wall) array in epithelial cells and the parallel organisation of plant cortical microtubules. This research investigates their formation through mathematical modelling and Monte Carlo simulations with […]
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J. Sa, B. Noh, H. Kim, D. Choi, S. Lee, Y. Chung, D. Kim, H. Jang
Recently, many particle physics applications can be parallelized by using multicore platforms such as CPU and GPU. In this paper, we propose a parallel processing approach for Quantum ChromoDynamics(QCD) application by using both CPU and GPU. Instead of distributing the parallelizable workload to either CPU or GPU, we distribute the workload simultaneously into both CPU […]
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Marcus Pinnecke, David Broneske, Gunter Saake
In recent years, the need for continuous processing and analysis of data streams has increased rapidly. To achieve high throughput-rates, stream-applications make use of operator-parallelization, batching-strategies and distribution. Another possibility is to utilize co-processors capabilities per operator. Further, the database community noticed, that a column-oriented architecture is essential for efficient co-processing, since the data transfer […]
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Lucas Benedicic
The complexity of the design of radio networks has grown with the adoption of modern standards. Therefore, the role of the computer for the faster delivery of accurate results has become increasingly important. In this thesis, novel methods for the planning and automatic optimization of radio networks are developed and discussed. The state-of-the-art metaheuristic algorithms, […]
J.-F. Remacle, R. Gandham, T. Warburton
This paper presents a spectral element finite element scheme that efficiently solves elliptic problems on unstructured hexahedral meshes. The discrete equations are solved using a matrix-free preconditioned conjugate gradient algorithm. An additive Schwartz two-scale preconditioner is employed that allows h-independence convergence. An extensible multi-threading programming API is used as a common kernel language that allows […]
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Naveen Anand Subramaniam, Omkar Deshmukh, Vennila Megavannan, Dan Negrut
With the advent of parallel processing architectures and a steep increase in parallelism found among the recent applications, GPGPUs have gained attention with respect to their importance in the execution of these applications. In this document, we specifically analyze Sparse-Matrix Vector Multiplication(SPMV) across different architectures, libraries and matrix formats. The experimental platforms include but are […]
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P. Egert, V. Havran
Bidirectional Texture Function (BTF) as an effective visual fidelity representation of surface appearance is becoming more and more widely used. In this paper we report on contributions to BTF data compression for multi-level vector quantization. We describe novel decompositions that improve the compression ratio by 15% in comparison with the original method, without loss of […]
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Amir Kavyan Ziabari, Rafael Ubal, Dana Schaa, David Kaeli
Evaluating the performance of parallel and heterogeneous programs and architectures can be challenging. An emulator or simulator can be used to aid the programmer. To provide guidance and feedback to the programmer, the simulator needs to present traces, reports, and debugging information in a coherent and unambiguous format. Although these outputs contain a lot of […]
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Klaus Kofler, Biagio Cosenza, Thomas Fahringer
Memory optimizations have became increasingly important in order to fully exploit the computational power of modern GPUs. The data arrangement has a big impact on the performance, and it is very hard for GPU programmers to identify a well-suited data layout. Classical data layout transformations include grouping together data fields that have similar access patterns, […]
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Tuan Tu Tran, Mathieu Giraud, Jean-Stephane Varre
Seed-based heuristics have proved to be efficient for studying similarity between genetic databases with billions of base pairs. This paper focuses on algorithms and data structures for the filtering phase in seed-based heuristics, with an emphasis on efficient parallel GPU/manycores implementation. We propose a 2-stage index structure which is based on neighborhood indexing and perfect […]
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Alexander Ortenberg
Parallelization is the answer to the ever-growing demands of computing power by taking advantage of multi-core processor technology and modern many-core graphics compute units. Multi-core CPUs and many-core GPUs have the potential to substantially reduce the execution time of a program but it is often a challenging task to ensure that all available hardware is […]
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Petr Pilar
We provide an efficient implementation of existing parameter synthesis techniques for stochastic systems modelled as continuous-time Markov chains (CTMCs). These techniques iteratively decompose the parameter space into its subspaces and approximate the satisfaction function that for any parameter values from the parameter space returns the probability of the formula being satisfied in the CTMC given […]
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