high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications

ASW: Accelerating Smith-Waterman Algorithm on Coupled CPU-GPU Architecture

Huihui Zou, Shanjiang Tang, Ce Yu, Hao Fu, Yusen Li, Wenjie Tang

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Tags: Algorithms, APU, Bioinformatics, Biology, CUDA, Heterogeneous systems, nVidia, nVidia GeForce GTX 750, OpenCL, Sequence alignment, Smith-Waterman algorithm

December 9, 2018 by hgpu

Optimization of a discontinuous finite element solver with OpenCL and StarPU

Philippe Helluy, Laura Mendoza, Bruno Weber

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Tags: Algorithms, Computer science, Hybrid computing, nVidia, nVidia GeForce GTX 1050 Ti, nVidia Quadro P 6000, OpenCL, Package, Task scheduling

December 9, 2018 by hgpu

A Framework for Fast and Efficient Neural Network Compression

Hyeji Kim, Muhammad Umar Karim, Chong-Min Kyung

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Tags: ARM, Caffe, Compression, Computational Complexity, Computer science, Computer vision, Deep learning, Neural networks, nVidia, nVidia GeForce GTX 1080 Ti

December 9, 2018 by hgpu

A Fast and Simple Approach to Merge and Merge Sort using Wide Vector Instructions

Alex Watkins, Oded Green

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Tags: Algorithms, Computer science, Intel Xeon Phi, Sorting

December 2, 2018 by hgpu

Mix-and-Match: A Model-driven Runtime Optimisation Strategy for BFS on GPUs

Merijn Verstraaten, Ana Lucia Varbanescu, Cees de Laat

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Tags: Breadth-First Search, Computer science, CUDA, nVidia, nVidia GeForce GTX Titan X, OpenCL, Package

December 2, 2018 by hgpu

Parallel source code transformation techniques using design patterns

David del Rio Astorga

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Tags: Algorithms, Auto-Tuning, Code generation, Computer science, CUDA, nVidia, nVidia GeForce GTX 680, Tesla K40, Thesis

December 2, 2018 by hgpu

PanJoin: A Partition-based Adaptive Stream Join

Fei Pan, Hans-Arno Jacobsen

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Tags: Algorithms, Computer science, Databases, FPGA, OpenCL

December 2, 2018 by hgpu

Performance Portability Challenges for Fortran Applications

Abigail Hsu, David Neill Asanza, Joseph A. Schoonover, Zach Jibben, Neil N. Carlson, Robert Robey

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Tags: Computer science, CUDA, Finite difference, Fortran, nVidia, OpenMP, Package, performance portability, Tesla P100, Tesla V100

December 2, 2018 by hgpu

CLort: High Throughput and Low Energy Network Intrusion Detection on IoT Devices with Embedded GPUs

Charalampos Stylianopoulos, Linus Johansson, Oskar Olsson, Magnus Almgren

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Tags: ARM, Computer science, IoT, OpenCL, Package, Security

November 25, 2018 by hgpu

SuperNeurons: FFT-based Gradient Sparsification in the Distributed Training of Deep Neural Networks

Linnan Wang, Wei Wu, Yiyang Zhao, Junyu Zhang, Hang Liu, George Bosilca, Jack Dongarra, Maurice Herlihy, Rodrigo Fonseca

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Tags: Compression, Computer science, CUDA, Deep learning, FFT, GPU cluster, Neural networks, nVidia, Package, Tesla P100

November 25, 2018 by hgpu

SWIFOLD: Smith-Waterman implementation on FPGA with OpenCL for long DNA sequences

Enzo Rucci, Carlos Garcia, Guillermo Botella, Armando De Giusti, Marcelo Naiouf, Manuel Prieto-Matias

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Tags: Algorithms, Biology, FPGA, OpenCL, Package, Smith-Waterman algorithm

November 25, 2018 by hgpu

Modeling Deep Learning Accelerator Enabled GPUs

Md Aamir Raihan, Negar Goli, Tor Aamodt

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Tags: Computer science, CUDA, Deep learning, Hardware Architecture, Machine learning, nVidia, Tesla V100

November 25, 2018 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Applications

ASW: Accelerating Smith-Waterman Algorithm on Coupled CPU-GPU Architecture

Optimization of a discontinuous finite element solver with OpenCL and StarPU

A Framework for Fast and Efficient Neural Network Compression

A Fast and Simple Approach to Merge and Merge Sort using Wide Vector Instructions

Mix-and-Match: A Model-driven Runtime Optimisation Strategy for BFS on GPUs

Parallel source code transformation techniques using design patterns

PanJoin: A Partition-based Adaptive Stream Join

Performance Portability Challenges for Fortran Applications

CLort: High Throughput and Low Energy Network Intrusion Detection on IoT Devices with Embedded GPUs

SuperNeurons: FFT-based Gradient Sparsification in the Distributed Training of Deep Neural Networks

SWIFOLD: Smith-Waterman implementation on FPGA with OpenCL for long DNA sequences

Modeling Deep Learning Accelerator Enabled GPUs

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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