high performance computing on graphics processing units: hgpu.org

Programming

hgpu.org » Programming

IODA: an Input/Output Deep Architecture for image labeling

J. Lerouge, R. Herault, Clement Chatelain, F. Jardin, R. Modzelewski

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Tags: Computer science, CUDA, Deep learning, Neural networks, nVidia, Package, Python, Tesla C1060, Theano

July 18, 2016 by hgpu

Heterogeneous Computing for Data Stream Mining

Vladimir Petko

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Tags: Algorithms, Computer science, Data mining, Heterogeneous systems, Machine learning, Nearest neighbour, nVidia, OpenCL, Tesla C2050, Thesis

July 18, 2016 by hgpu

A Kinetic Vlasov Model for Plasma Simulation Using Discontinuous Galerkin Method on Many-Core Architectures

Noah Reddell

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Tags: OpenCL, Physics, Plasma physics, Thesis

July 18, 2016 by hgpu

Stability and Performance of Various Singular Value QR Implementations on Multicore CPU with a GPU

Ichitaro Yamazaki, Stanimire Tomov, Jack Dongarra

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Tags: BLAS, Computer science, CUDA, Linear Algebra, Matrix decomposition, Mixed precision, Numerical Analysis, nVidia, Performance, Tesla K20

July 16, 2016 by hgpu

An investigation of GPU-based stiff chemical kinetics integration methods

Nicholas J. Curtis, Kyle E. Niemeyer, Chih-Jen Sung

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Tags: Algorithms, Chemistry, Computational Physics, CUDA, nVidia, Physics, Tesla C2075

July 16, 2016 by hgpu

GeauxDock: Accelerating Structure-Based Virtual Screening with Heterogeneous Computing

Ye Fang, Yun Ding, Wei P. Feinstein, David M. Koppelman, Juana Moreno, Mark Jarrell, J. Ramanujam, Michal Brylinski

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Tags: Algorithms, Chemistry, CUDA, Heterogeneous systems, Intel Xeon Phi, Medicine, Molecular dynamics, nVidia, nVidia GeForce GTX 980, OpenMP, Package

July 16, 2016 by hgpu

Finite Element Integration with Quadrature on the GPU

Matthew G. Knepley, Karl Rupp, Andy R. Terrel

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Tags: AMD FirePro W9100, ATI, Computer science, Differential equations, Mathematical Software, nVidia, nVidia GeForce GTX 580, nVidia GeForce GTX 750 Ti, OpenCL, Partial differential equations, PDEs, Tesla K20

July 16, 2016 by hgpu

Accelerating Eulerian Fluid Simulation With Convolutional Networks

Jonathan Tompson, Kristofer Schlachter, Pablo Sprechmann, Ken Perlin

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Tags: 3D Graphics and Realism, CNN, Computational Complexity, CUDA, Deep learning, Fluid dynamics, Fluid simulation, Machine learning, nVidia, nVidia GeForce GTX Titan X

July 16, 2016 by hgpu

OpenFace: A general-purpose face recognition library with mobile applications

Brandon Amos, Bartosz Ludwiczuk, Mahadev Satyanarayanan

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Tags: Computer science, Computer vision, CUDA, Deep learning, Lua, Neural networks, nVidia, Package, Python, Tesla K40

July 13, 2016 by hgpu

GPU Accelerated Discrete Element Method (DEM) Molecular Dynamics for Conservative, Faceted Particle Simulations

Matthew Spellings, Ryan L. Marson, Joshua A. Anderson, Sharon C. Glotzer

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Tags: Computational Physics, CUDA, Molecular dynamics, nVidia, nVidia Quadro M 6000, Package, Particle simulation, Physics

July 13, 2016 by hgpu

LU, QR, and Cholesky factorizations: Programming Model, Performance Analysis and Optimization Techniques for the Intel Knights Landing Xeon Phi

Azzam Haidar, Stanimire Tomov, Konstantin Arturov, Murat Guney, Shane Story, Jack Dongarra

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Tags: Algorithms, Computer science, Factorization, Heterogeneous systems, Intel Xeon Phi, Linear Algebra, Performance, Task scheduling

July 13, 2016 by hgpu

The Vectorization of the Tersoff Multi-Body Potential: An Exercise in Performance Portability

Markus Hohnerbach, Ahmed E. Ismail, Paolo Bientinesi

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Tags: Chemistry, Computational chemistry, Computer science, CUDA, Intel Xeon Phi, Materials Science, Molecular dynamics, MPI, nVidia, Package, performance portability, Tesla K20, Tesla K40

July 13, 2016 by hgpu

Code examples for paper on SYCL backend of Kokkos - IWOCL 2024

Experiences with implementing Kokkos’ SYCL backend

ROCm's implementation of Gromacs

GROMACS on AMD GPU-Based HPC Platforms: Using SYCL for Performance and Portability

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

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high performance computing on graphics processing units: hgpu.org

Programming

IODA: an Input/Output Deep Architecture for image labeling

Heterogeneous Computing for Data Stream Mining

A Kinetic Vlasov Model for Plasma Simulation Using Discontinuous Galerkin Method on Many-Core Architectures

Stability and Performance of Various Singular Value QR Implementations on Multicore CPU with a GPU

An investigation of GPU-based stiff chemical kinetics integration methods

GeauxDock: Accelerating Structure-Based Virtual Screening with Heterogeneous Computing

Finite Element Integration with Quadrature on the GPU

Accelerating Eulerian Fluid Simulation With Convolutional Networks

OpenFace: A general-purpose face recognition library with mobile applications

GPU Accelerated Discrete Element Method (DEM) Molecular Dynamics for Conservative, Faceted Particle Simulations

LU, QR, and Cholesky factorizations: Programming Model, Performance Analysis and Optimization Techniques for the Intel Knights Landing Xeon Phi

The Vectorization of the Tersoff Multi-Body Potential: An Exercise in Performance Portability

Recent source codes

Code examples for paper on SYCL backend of Kokkos - IWOCL 2024

ROCm's implementation of Gromacs

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

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