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High Performance Computing for solving large sparse systems. Optical Diffraction Tomography as a case of study

Gloria Ortega Lopez

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Tags: Computer science, CUDA, Differential equations, FEM, Finite difference, Finite element method, GPU cluster, Heterogeneous systems, Linear Algebra, nVidia, nVidia GeForce GTX 480, nVidia GeForce GTX 680, Package, Partial differential equations, PDEs, Sparse matrix, Tesla C2050, Tesla M2070, Tesla M2090, Thesis, Tomography

March 30, 2015 by hgpu

Real-time multi-view deconvolution

Benjamin Schmid, Jan Huisken

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Tags: Biology, CUDA, Microscopy, nVidia, nVidia GeForce GTX Titan, Package

March 30, 2015 by hgpu

Parallel Unsteady Flow Line Integral Convolution for High-Performance Dense Visualization

Zi'ang Ding, Zhanping Liu, Yang Yu, Wei Chen

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Tags: CUDA, Fluid dynamics, Image generation, nVidia, nVidia GeForce GTX 590, Visualization

March 28, 2015 by hgpu

Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space

Richard Wilton, Tamas Budavari, Ben Langmead, Sarah J. Wheelan, Steven L. Salzberg, Alexander S. Szalay

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Tags: Bioinformatics, Biology, CUDA, nVidia, Package, Sequence alignment, Tesla K20

March 28, 2015 by hgpu

Shortest-Path Queries in Planar Graphs on GPU-Accelerated Architectures

Guillaume Chapuis, Hristo Djidjev

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Tags: Computer science, Data Structures and Algorithms, Distributed computing, Distributed data structures, GPU cluster, nVidia, Path problems, Tesla M2090

March 28, 2015 by hgpu

PErasure: a Parallel Cauchy Reed-Solomon Coding Library for GPUs

Xiaowen Chu, Chengjian Liu, Kai Ouyang, Ling Sing Yung, Hai Liu, Yiu-Wing Leung

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Tags: Computer science, CUDA, Error recovery, nVidia, nVidia GeForce GTX 780

March 28, 2015 by hgpu

Pseudorandom Numbers Generation for Monte Carlo Simulations on GPUs: OpenCL Approach

Vadim Demchik

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Tags: ATI, ATI Radeon HD 5870, ATI Radeon HD 6970, Computer science, Monte Carlo simulation, nVidia, nVidia GeForce GTX 560, nVidia GeForce GTX 560 M, nVidia GeForce GTX 780, OpenCL, Package, Pseudo-random number generators, Review, Tesla K40

March 25, 2015 by hgpu

Energy-efficient Computing on Distributed GPUs using Dynamic Parallelism and GPU-controlled Communication

Lena Oden, Benjamin Klenk, Holger Froning

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Tags: Cluster computing, Computer science, CUDA, Distributed computing, Energy-efficient computing, GPU cluster, nVidia, Tesla K20

March 25, 2015 by hgpu

Analysis of illumination conditions at the lunar south pole using parallel computing techniques

Ramiro Marco Figuera

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Tags: Earth and Space Sciences, nVidia, nVidia Quadro FX 1800, OpenCL, Thesis

March 25, 2015 by hgpu

Data driven scheduling approach for the multi-node multi-GPU Cholesky decomposition

Yuki Tsujita, Toshio Endo

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Tags: Computer science, CUBLAS, CUDA, Heterogeneous systems, Linear Algebra, nVidia, Task scheduling, Tesla K20

March 25, 2015 by hgpu

Parallelization, Scalability, and Reproducibility in Next-Generation Sequencing Analysis

Johannes Koster

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Tags: Algorithms, Bayesian, Bioinformatics, Biology, Filtering, Next-Generation sequencing, nVidia, nVidia GeForce GTX 580, nVidia GeForce GTX 780, OpenCL, Package, Thesis

March 23, 2015 by hgpu

Massively Parallel Construction of the Cell Graph

Krzysztof Kaczmarski, Pawel Rzazewski, Albert Wolant

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Tags: Algorithms, Computer science, CUDA, nVidia, Robotics, Tesla K40

March 23, 2015 by hgpu

Kernel Library for LLM Serving

Compiler and Runtime Systems for Generative AI Models

Adaptivity in AdaptiveCpp: Optimizing Performance by Leveraging Runtime Information During JIT-Compilation

Neptune: Advanced ML Operator Fusion for Locality and Parallelism on GPUs

Genten: Software for Generalized Tensor Decompositions by Sandia National Laboratories

A Performance Portable Matrix Free Dense MTTKRP in GenTen

Interleaved Learning and Exploration: A Self-Adaptive Fuzz Testing Framework for MLIR

Pinocchio: PINpointing Orbit Crossing Collapsed Hierarchical Objects

Accelerating cosmological simulations on GPUs: a portable approach using OpenMP

KernelCoder: trained on a curated dataset of reasoning traces and CUDA kernel pairs

ConCuR: Conciseness Makes State-of-the-Art Kernel Generation

VibeCodeHPC - Multi Agentic Vibe Coding for HPC

VibeCodeHPC: An Agent-Based Iterative Prompting Auto-Tuner for HPC Code Generation Using LLMs

Compile-Time Resource Safety for GPU APIs: A Low-Overhead Typestate Framework

exa-AMD: Exascale Accelerated Materials Discovery

exa-AMD: An Exascale-Ready Framework for Accelerating the Discovery and Design of Functional Materials

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high performance computing on graphics processing units: hgpu.org

High Performance Computing for solving large sparse systems. Optical Diffraction Tomography as a case of study

Real-time multi-view deconvolution

Parallel Unsteady Flow Line Integral Convolution for High-Performance Dense Visualization

Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space

Shortest-Path Queries in Planar Graphs on GPU-Accelerated Architectures

PErasure: a Parallel Cauchy Reed-Solomon Coding Library for GPUs

Pseudorandom Numbers Generation for Monte Carlo Simulations on GPUs: OpenCL Approach

Energy-efficient Computing on Distributed GPUs using Dynamic Parallelism and GPU-controlled Communication

Analysis of illumination conditions at the lunar south pole using parallel computing techniques

Data driven scheduling approach for the multi-node multi-GPU Cholesky decomposition

Parallelization, Scalability, and Reproducibility in Next-Generation Sequencing Analysis

Massively Parallel Construction of the Cell Graph

Recent source codes

Kernel Library for LLM Serving

Adaptivity in AdaptiveCpp: Optimizing Performance by Leveraging Runtime Information During JIT-Compilation

Neptune: Advanced ML Operator Fusion for Locality and Parallelism on GPUs

Genten: Software for Generalized Tensor Decompositions by Sandia National Laboratories

Interleaved Learning and Exploration: A Self-Adaptive Fuzz Testing Framework for MLIR

Pinocchio: PINpointing Orbit Crossing Collapsed Hierarchical Objects

KernelCoder: trained on a curated dataset of reasoning traces and CUDA kernel pairs

VibeCodeHPC - Multi Agentic Vibe Coding for HPC

Compile-Time Resource Safety for GPU APIs: A Low-Overhead Typestate Framework

exa-AMD: Exascale Accelerated Materials Discovery

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