high performance computing on graphics processing units: hgpu.org

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Performance and energy footprint assessment of FPGAs and GPUs on HPC systems using Astrophysics application

David Goz, Georgios Ieronymakis, Vassilis Papaefstathiou, Nikolaos Dimou, Sara Bertocco, Giuliano Taffoni, Francesco Simula, Antonio Ragagnin, Luca Tornatore, Igor Coretti

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Tags: ARM, Astrophysics, CUDA, FPGA, Heterogeneous systems, HPC, HSL, N-body simulation, nVidia, OpenCL, Performance, Physics, SoC, Tesla V100

March 15, 2020 by hgpu

Inline Vector Compression for Computational Physics

Will Trojak, Freddie Witherden

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Tags: Compression, Computational Physics, Computer science, CUDA, nVidia, nVidia GeForce GTX Titan V, Package, Physics, Tesla V100

March 8, 2020 by hgpu

Evaluating the Energy Efficiency of OpenCL-accelerated AutoDock Molecular Docking

Leonardo Solis-Vasquez, Diogo Santos-Martins, Andreas Koch, Stefano Forli

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Tags: AMD Radeon RX Vega 56, ATI, Biology, Chemistry, Energy-efficient computing, Heterogeneous systems, molecular docking, nVidia, OpenCL, Tesla V100

March 1, 2020 by hgpu

From English To Foreign Languages: Transferring Pre-trained Language Models

Ke Tran

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Tags: Computer science, NLP, nVidia, Tesla V100

February 23, 2020 by hgpu

LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment

Alberto Zeni, Giulia Guidi, Marquita Ellis, Nan Ding, Marco D. Santambrogio, Steven Hofmeyr, Aydın Buluç, Leonid Oliker, Katherine Yelick

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Tags: Bioinformatics, Biology, CUDA, nVidia, Sequence alignment, Tesla V100

February 16, 2020 by hgpu

Task-based, GPU-accelerated and Robust Library for Solving Dense Nonsymmetric Eigenvalue Problems

Mirko Myllykoski, Carl Christian Kjelgaard Mikkelsen

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Tags: Computer science, CUDA, Mathematical Software, nVidia, Package, Tesla V100

February 16, 2020 by hgpu

md_poly: A Performance-Portable Polyhedral Compiler Based on Multi-Dimensional Homomorphisms

Ari Rasch, Richard Schulze, Sergei Gorlatch

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Tags: Code generation, Compilers, Computer science, nVidia, OpenCL, Package, performance portability, Tesla V100

January 19, 2020 by hgpu

GPU Tensor Cores for fast Arithmetic Reductions

Cristóbal A. Navarro, Roberto Carrasco, Ricardo J. Barrientos, Javier A. Riquelme, Raimundo Vega

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Tags: Algorithms, Computer science, CUDA, Deep learning, Machine learning, nVidia, Tesla V100, TPU

January 19, 2020 by hgpu

A Parallel Sparse Tensor Benchmark Suite on CPUs and GPUs

Jiajia Li, Mahesh Lakshminarasimhan, Xiaolong Wu, Ang Li, Catherine Olschanowsky, Kevin Barker

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Tags: Benchmarking, Computer science, CUDA, Linear Algebra, Machine learning, nVidia, nVidia DGX-1, Package, Performance, Tesla P100, Tesla V100

January 12, 2020 by hgpu

A Unified Iteration Space Transformation Framework for Sparse and Dense Tensor Algebra

Ryan Senanayake, Fredrik Kjolstad, Changwan Hong, Shoaib Kamil, Saman Amarasinghe

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Tags: Code generation, Compilers, Computer science, CUDA, Linear Algebra, nVidia, nVidia DGX-1, Package, Sparse matrix, Tesla V100

January 5, 2020 by hgpu

Accelerating Molecular Docking by Parallelized Heterogeneous Computing – A Case Study of Performance, Quality of Results, and Energy-Efficiency using CPUs, GPUs, and FPGAs

Leonardo Solis Vasquez

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Tags: AMD Radeon RX Vega 56, ATI, Computer science, FPGA, Heterogeneous systems, Macromolecule, nVidia, OpenCL, Package, Physics, Tesla V100, Thesis

December 29, 2019 by hgpu

GPU Computing with Python: Performance, Energy Efficiency and Usability

Håvard H. Holm, André R. Brodtkorb, Martin L. Sætra

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Tags: Computer science, CUDA, Energy-efficient computing, nVidia, nVidia GeForce GTX 780, nVidia GeForce GTX 840 M, OpenCL, Performance, Python, Tesla K20, Tesla M2090, Tesla P100, Tesla V100

December 8, 2019 by hgpu

HPCToolkit

Refining HPCToolkit for application performance analysis at exascale

Open Catalog of Best Practices for Modernization and Optimization

Optimizing the Weather Research and Forecasting Model with OpenMP Offload and Codee

Owl: Differential-based Side-Channel Leakage Detection for CUDA Applications

pSTL-Bench: Micro-benchmark suite designed to evaluate the scalability and efficiency of parallel C++ STL implementations

Exploring Scalability in C++ Parallel STL Implementations

GPU-Smash: Compression abstraction library

A Parallel Compression Pipeline for Improving GPU Virtualization Data Transfers

Noarr Structures

Abstractions for C++ code optimizations in parallel high-performance applications

$3D-fractal-generators$

HiCCL: A hierarchical collective communications library with portable optimizations

HiCCL: A Hierarchical Collective Communication Library

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high performance computing on graphics processing units: hgpu.org

Performance and energy footprint assessment of FPGAs and GPUs on HPC systems using Astrophysics application

Inline Vector Compression for Computational Physics

Evaluating the Energy Efficiency of OpenCL-accelerated AutoDock Molecular Docking

From English To Foreign Languages: Transferring Pre-trained Language Models

LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment

Task-based, GPU-accelerated and Robust Library for Solving Dense Nonsymmetric Eigenvalue Problems

md_poly: A Performance-Portable Polyhedral Compiler Based on Multi-Dimensional Homomorphisms

GPU Tensor Cores for fast Arithmetic Reductions

A Parallel Sparse Tensor Benchmark Suite on CPUs and GPUs

A Unified Iteration Space Transformation Framework for Sparse and Dense Tensor Algebra

Accelerating Molecular Docking by Parallelized Heterogeneous Computing – A Case Study of Performance, Quality of Results, and Energy-Efficiency using CPUs, GPUs, and FPGAs

GPU Computing with Python: Performance, Energy Efficiency and Usability

Recent source codes

HPCToolkit

Open Catalog of Best Practices for Modernization and Optimization

Owl: Differential-based Side-Channel Leakage Detection for CUDA Applications

pSTL-Bench: Micro-benchmark suite designed to evaluate the scalability and efficiency of parallel C++ STL implementations

GPU-Smash: Compression abstraction library

Noarr Structures

3D-fractal-generators

SyncPerformance

VerCors: a verification toolset for verifying parallel and concurrent software

HiCCL: A hierarchical collective communications library with portable optimizations

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