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Seamless GPU acceleration for C++ based physics with the Metal Shading Language on Apple’s M series unified chips

Lars Gebraad, Andreas Fichtner

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Tags: Benchmarking, Computer science, Finite difference, nVidia, Package, Physics, Wave equation

June 12, 2022 by hgpu

NetKet 3: Machine Learning Toolbox for Many-Body Quantum Systems

Filippo Vicentini, Damian Hofmann, Attila Szabo, Dian Wu, Christopher Roth, Clemens Giuliani, Gabriel Pescia, Jannes Nys, Vladimir Vargas-Calderon, Nikita Astrakhantsev, Giuseppe Carleo

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Tags: Linear Algebra, Machine learning, Neural networks, nVidia, nVidia GeForce RTX 3090, Package, Physics, Python, Quantum Physics, Tesla A100

December 26, 2021 by hgpu

General purpose lattice QCD code set Bridge++ 2.0 for high performance computing

Yutaro Akahoshi, Sinya Aoki, Tatsumi Aoyama, Issaku Kanamori, Kazuyuki Kanaya, Hideo Matsufuru, Yusuke Namekawa, Hidekatsu Nemura, Yusuke Taniguchi

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Tags: GPU cluster, HEP, High Energy Physics - Lattice, Numerical simulation, nVidia, OpenACC, Package, Physics, QCD, Tesla V100

November 14, 2021 by hgpu

Lettuce: PyTorch-based Lattice Boltzmann Framework

Mario Christopher Bedrunka, Dominik Wilde, Martin Kliemank, Dirk Reith, Holger Foysi, Andreas Krämer

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Tags: Algorithms, Computational Physics, CUDA, Deep learning, Fluid dynamics, Lattice Boltzmann model, Machine learning, nVidia, nVidia GeForce RTX 2070, Package, Physics, Tesla V100

June 27, 2021 by hgpu

Physics and Computing Performance of the Exa.TrkX TrackML Pipeline

Xiangyang Ju, Daniel Murnane, Paolo Calafiura, Nicholas Choma, Sean Conlon, Steve Farrell, Yaoyuan Xu, Maria Spiropulu, Jean-Roch Vlimant, Adam Aurisano, Jeremy Hewes, Giuseppe Cerati, Lindsey Gray, Thomas Klijnsma, Jim Kowalkowski, Markus Atkinson, Mark Neubauer, Gage DeZoort, Savannah Thais, Aditi Chauhan, Alex Schuy, Shih-Chieh Hsu, Alex Ballow, Alina Lazar

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Tags: Algorithms, CUDA, Deep learning, Exa.TrkX, HEP, Neural networks, nVidia, Package, Physics, Tesla A100, Tesla V100

March 21, 2021 by hgpu

ECM modeling and performance tuning of SpMV and Lattice QCD on A64FX

Christie Alappat, Nils Meyer, Jan Laukemann, Thomas Gruber, Georg Hager, Gerhard Wellein, Tilo Wettig

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Tags: Computer science, CUDA, nVidia, Optimization, Package, Physics, QCD, Sparse matrix, Tesla V100

March 14, 2021 by hgpu

Accelerating AutoDock4 with GPUs and Gradient-Based Local Search

Diogo Santos-Martins, Leonardo Solis-Vasquez, Andreas Koch, and Stefano Forli

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Tags: Algorithms, Chemistry, Macromolecule, molecular docking, OpenCL, Package, Physics

February 28, 2021 by hgpu

Highly Efficient Lattice-Boltzmann Multiphase Simulations of Immiscible Fluids at High-Density Ratios on CPUs and GPUs through Code Generation

Markus Holzer, Martin Bauer, Harald Kostler, Ulrich Rüde

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Tags: Algorithms, cfd, Code generation, CUDA, Fluid dynamics, Lattice Boltzmann model, MPI, nVidia, OpenCL, Package, Physics, Programming techniques, Tesla P100, Tesla V100

December 20, 2020 by hgpu

Tinker-HP: Accelerating Molecular Dynamics Simulations of Large Complex Systems with Advanced Point Dipole Polarizable Force Fields using GPUs and Multi-GPUs systems

Olivier Adjoua, Louis Lagardère, Luc-Henri Jolly, Arnaud Durocher, Thibaut Very, Isabelle Dupays, Zhi Wang, Théo Jaffrelot Inizan, Frédéric Célerse, Pengyu Ren, Jay W. Ponder, Jean-Philip Piquemal

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Tags: Biophysics, Computational Physics, CUDA, Molecular dynamics, nVidia, nVidia DGX-A100, OpenACC, Package, Physics, Tesla V100

November 8, 2020 by hgpu

FlowPM: Distributed TensorFlow Implementation of the FastPM Cosmological N-body Solver

Chirag Modi, Francois Lanusse, Uros Seljak

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Tags: Astrophysics, Cosmology, CUDA, N-body simulation, nVidia, Package, Physics, TensorFlow, Tesla V100

October 25, 2020 by hgpu

RoadRunner: a fast and flexible exoplanet transit model

Hannu Parviainen

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Tags: Astrophysics, Earth and Planetary Astrophysics, Heterogeneous systems, Instrumentation and Methods for Astrophysics, OpenCL, Package, Python

September 27, 2020 by hgpu

GPU coprocessors as a service for deep learning inference in high energy physics

Jeffrey Krupa, Kelvin Lin, Maria Acosta Flechas, Jack Dinsmore, Javier Duarte, Philip Harris, Scott Hauck, Burt Holzman, Shih-Chieh Hsu, Thomas Klijnsma, Mia Liu, Kevin Pedro, Natchanon Suaysom, Matt Trahms, Nhan Tran

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Tags: Deep learning, FPGA, HEP, nVidia, Package, Physics, Tesla T4, Tesla V100

July 26, 2020 by hgpu

high performance computing on graphics processing units: hgpu.org

Packages

Seamless GPU acceleration for C++ based physics with the Metal Shading Language on Apple’s M series unified chips

NetKet 3: Machine Learning Toolbox for Many-Body Quantum Systems

General purpose lattice QCD code set Bridge++ 2.0 for high performance computing

Lettuce: PyTorch-based Lattice Boltzmann Framework

Physics and Computing Performance of the Exa.TrkX TrackML Pipeline

ECM modeling and performance tuning of SpMV and Lattice QCD on A64FX

Accelerating AutoDock4 with GPUs and Gradient-Based Local Search

Highly Efficient Lattice-Boltzmann Multiphase Simulations of Immiscible Fluids at High-Density Ratios on CPUs and GPUs through Code Generation

Tinker-HP: Accelerating Molecular Dynamics Simulations of Large Complex Systems with Advanced Point Dipole Polarizable Force Fields using GPUs and Multi-GPUs systems

FlowPM: Distributed TensorFlow Implementation of the FastPM Cosmological N-body Solver

RoadRunner: a fast and flexible exoplanet transit model

GPU coprocessors as a service for deep learning inference in high energy physics

Recent source codes

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DuoReduce: MLIR's benchmark

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Hercules: A Compiler for Productive Programming of Heterogeneous Systems

Celerity Runtime: High-level C++ for Accelerator Clusters

wgpy: WebGL accelerated numpy-compatible array library for web browser

Microbenchmarking OpenMP target offload with Catch2

SUperman: Highly Efficient Permanent Computation Library

TransCL: An Automatic CUDA-to-OpenCL Programs Transformation Framework

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