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Parallel scalable simulations of biological neural networks using TensorFlow: A beginner’s guide

Saptarshi Soham Mohanta, Collins Assisi

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Tags: Biology, Computer science, CUDA, Deep learning, Differential equations, Machine learning, Neural networks, nVidia, ODEs, Ordinary differential equations, Package, Partial differential equations, PDEs, Python, TensorFlow, Tutorial

June 12, 2019 by hgpu

Temporospatial Epidemic Simulations Using Heterogeneous Computing

Dhananjai M. Rao

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Tags: Earth and Space Sciences, HPC, OpenCL, Package

June 9, 2019 by hgpu

Diagnosing Performance Bottlenecks in HPC Applications

Kenneth Czechowski

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Tags: Computer science, HPC, Package, Performance, Thesis

June 9, 2019 by hgpu

Dynamic Distribution Pruning for Efficient Network Architecture Search

Xiawu Zheng, Rongrong Ji, Lang Tang, Yan Wan, Baochang Zhang, Yongjian Wu, Yunsheng Wu, Ling Shao

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Tags: Computer science, Computer vision, CUDA, Deep learning, Machine learning, nVidia, Package, Tesla V100

June 5, 2019 by hgpu

Raising the Performance of the Tinker-HP Molecular Modeling Package on Intel’s HPC Architectures: a Living Review [Article v1.0]

Luc-Henri Jolly, Alejandro Duran, Louis Lagardere, Jay W. Ponder, Pengyu Ren, Jean-Philip Piquemal

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Tags: Chemical Physics, Computational Physics, Computer science, Intel Xeon Phi, Mathematical Software, Molecular dynamics, Molecular modeling, OpenMP, Package

June 5, 2019 by hgpu

Classify QCD phase transition with deep learning

Long-Gang Pang, Kai Zhou, Nan Su, Hannah Petersen, Horst Stoecker, Xin-Nian Wang

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Tags: Deep learning, HEP, Machine learning, Neural networks, OpenCL, Package, Pattern recognition, Phase transition, Physics, QCD

June 2, 2019 by hgpu

A Development Platform for Embedded Domain-Specific Languages

Shigeru Chiba, YungYu Zhuang, Thanh-Chung Dao

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Tags: Computer science, CUDA, DSL, High-level Languages, Java, nVidia, Package

June 2, 2019 by hgpu

Breadth-First Search using Dynamic Parallelism on the GPU

Dominik Todling

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Tags: Algorithms, Breadth-First Search, Computer science, CUDA, nVidia, Package

May 30, 2019 by hgpu

Multi-GPU Rendering with Vulkan API

Lars Olav Tolo

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Tags: AMD Radeon RX 460, ATI, Computer science, Heterogeneous systems, nVidia, nVidia GeForce GTX 1080, nVidia GeForce GTX 970, Package, Thesis, Vulkan

May 26, 2019 by hgpu

Comparing Energy Efficiency of CPU, GPU and FPGA Implementations for Vision Kernels

Murad Qasaimeh, Kristof Denolf, Jack Lo, Kees Vissers, Joseph Zambreno, Phillip H. Jones

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Tags: ARM, Benchmarking, Computer science, Computer vision, CUDA, FPGA, nVidia, nVidia Jetson TX2, OpenCV, Package

May 26, 2019 by hgpu

Neural Query Language: A Knowledge Base Query Language for Tensorflow

William W. Cohen, Matthew Siegler, Alex Hofer

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Tags: Computer science, Databases, Deep learning, Package, Performance

May 19, 2019 by hgpu

An optimizing multi-platform source-to-source compiler framework for the NEURON MODeling Language

Pramod Kumbhar, Omar Awile, Liam Keegan, Jorge Blanco Alonso, James King, Michael Hines, Felix Schuermann

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Tags: Biophysics, Code generation, Compilers, Computer science, CUDA, HPC, Intel Xeon Phi, LLVM, nVidia, OpenACC, OpenMP, Package

May 15, 2019 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Packages

Parallel scalable simulations of biological neural networks using TensorFlow: A beginner’s guide

Temporospatial Epidemic Simulations Using Heterogeneous Computing

Diagnosing Performance Bottlenecks in HPC Applications

Dynamic Distribution Pruning for Efficient Network Architecture Search

Raising the Performance of the Tinker-HP Molecular Modeling Package on Intel’s HPC Architectures: a Living Review [Article v1.0]

Classify QCD phase transition with deep learning

A Development Platform for Embedded Domain-Specific Languages

Breadth-First Search using Dynamic Parallelism on the GPU

Multi-GPU Rendering with Vulkan API

Comparing Energy Efficiency of CPU, GPU and FPGA Implementations for Vision Kernels

Neural Query Language: A Knowledge Base Query Language for Tensorflow

An optimizing multi-platform source-to-source compiler framework for the NEURON MODeling Language

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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