high performance computing on graphics processing units: hgpu.org

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A Comparison of Potential Interfaces for Batched BLAS Computations

Samuel D. Relton, Pedro Valero-Lara, Mawussi Zounon

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Tags: BLAS, Computer science, CUDA, Linear Algbera, nVidia, Package, Tesla K40

August 11, 2016 by hgpu

OpenCL-accelerated object classification in video streams using Spatial Pooler of Hierarchical Temporal Memory

Maciej Wielgosz, Marcin Pietron

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Tags: Algorithms, AMD Radeon R9 390, ATI, Computer science, Computer vision, Machine learning, OpenCL, Package, PyOpenCL, Python

August 8, 2016 by hgpu

Iterative Hard Thresholding for Model Selection in Genome-Wide Association Studies

Kevin L. Keys, Gary K. Chen, Kenneth Lange

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Tags: Bioinformatics, Genetics, Machine learning, nVidia, OpenCL, Package, Statistics, Tesla C2050

August 8, 2016 by hgpu

RETURNN: The RWTH Extensible Training framework for Universal Recurrent Neural Networks

Patrick Doetsch, Albert Zeyer, Paul Voigtlaender, Ilya Kulikov, Ralf Schluter, Hermann Ney

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Tags: Computer science, CUDA, Machine learning, Neural and Evolutionary Computing, nVidia, nVidia GeForce GTX 980, Package, RNN, Speech recognition

August 4, 2016 by hgpu

Drug Drug Interaction Extraction from Biomedical Literature Using Syntax Convolutional Neural Network

Zhehuan Zhao, Zhihao Yang, Ling Luo, Hongfei Lin, Jian Wang

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Tags: Bioinformatics, Biology, CUDA, Deep learning, Neural networks, NLP, nVidia, Package, Python, Tesla K20, Text mining

August 1, 2016 by hgpu

3D visualization of astronomy data cubes using immersive displays

Gilles Ferrand, Jayanne English, Pourang Irani

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Tags: Astrophysics, Instrumentation and Methods for Astrophysics, nVidia, OpenGL, Package, Rendering, Virtual reality, Visualization

August 1, 2016 by hgpu

An Autotuning Framework for Intel Xeon Phi Platforms

Lefteris Christoforidis

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Tags: Computer science, Intel Xeon Phi, Package, Performance, Python, Thesis

July 30, 2016 by hgpu

Real-Time Stochastic Kinodynamic Motion Planning via Multiobjective Search on GPUs

Brian Ichter, Edward Schmerling, Ali-akbar Agha-mohammadi, Marco Pavone

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 980, Package, Robotics

July 28, 2016 by hgpu

Gerbil: A Fast and Memory-Efficient k-mer Counter with GPU-Support

Marius Erbert, Steffen Rechner, Matthias Muller-Hannemann

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Tags: Bioinformatics, Biology, Computer science, CUDA, nVidia, nVidia GeForce GTX 970, nVidia GeForce GTX Titan, Package

July 26, 2016 by hgpu

Scientific Computing Using Consumer Video-Gaming Hardware Devices

Glenn Volkema, Gaurav Khanna

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Tags: AMD Radeon R9 Fury X, ATI, Benchmarking, Computer science, nVidia, nVidia Tegra TX1, OpenCL, Package, Performance, Tesla K40

July 20, 2016 by hgpu

IODA: an Input/Output Deep Architecture for image labeling

J. Lerouge, R. Herault, Clement Chatelain, F. Jardin, R. Modzelewski

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Tags: Computer science, CUDA, Deep learning, Neural networks, nVidia, Package, Python, Tesla C1060, Theano

July 18, 2016 by hgpu

GeauxDock: Accelerating Structure-Based Virtual Screening with Heterogeneous Computing

Ye Fang, Yun Ding, Wei P. Feinstein, David M. Koppelman, Juana Moreno, Mark Jarrell, J. Ramanujam, Michal Brylinski

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Tags: Algorithms, Chemistry, CUDA, Heterogeneous systems, Intel Xeon Phi, Medicine, Molecular dynamics, nVidia, nVidia GeForce GTX 980, OpenMP, Package

July 16, 2016 by hgpu

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

BoltzGen:Toward Universal Binder Design

CUDA-L2: Surpassing cuBLAS Performance for Matrix Multiplication through Reinforcement Learning

cuPilot: A Strategy-Coordinated Multi-agent Framework for CUDA Kernel Evolution

MATLAB Tensor Core models

Accurate Models of NVIDIA Tensor Cores

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high performance computing on graphics processing units: hgpu.org

Packages

A Comparison of Potential Interfaces for Batched BLAS Computations

OpenCL-accelerated object classification in video streams using Spatial Pooler of Hierarchical Temporal Memory

Iterative Hard Thresholding for Model Selection in Genome-Wide Association Studies

RETURNN: The RWTH Extensible Training framework for Universal Recurrent Neural Networks

Drug Drug Interaction Extraction from Biomedical Literature Using Syntax Convolutional Neural Network

3D visualization of astronomy data cubes using immersive displays

An Autotuning Framework for Intel Xeon Phi Platforms

Real-Time Stochastic Kinodynamic Motion Planning via Multiobjective Search on GPUs

Gerbil: A Fast and Memory-Efficient k-mer Counter with GPU-Support

Scientific Computing Using Consumer Video-Gaming Hardware Devices

IODA: an Input/Output Deep Architecture for image labeling

GeauxDock: Accelerating Structure-Based Virtual Screening with Heterogeneous Computing

Recent source codes

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

BoltzGen:Toward Universal Binder Design

CUDA-L2: Surpassing cuBLAS Performance for Matrix Multiplication through Reinforcement Learning

cuPilot: A Strategy-Coordinated Multi-agent Framework for CUDA Kernel Evolution

MATLAB Tensor Core models

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