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An efficient parallel algorithm for accelerating computational protein design

Yichao Zhou, Wei Xu, Bruce R. Donald, Jianyang Zeng

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Tags: Algorithms, Bioinformatics, Biology, CUDA, Java, nVidia, Package, Tesla K20

June 23, 2014 by hgpu

A Scala Prototype to Generate Multigrid Solver Implementations for Different Problems and Target Multi-Core Platforms

Harald Koestler, Christian Schmitt, Sebastian Kuckuk, Frank Hannig, Juergen Teich, Ulrich Ruede

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Tags: Algorithms, Computer science, CUDA, Differential equations, Mathematical Software, nVidia, nVidia GeForce GTX 680, Partial differential equations, PDEs

June 23, 2014 by hgpu

Coupled Vlasov and two-fluid codes on GPUs

M. Rieke, T. Trost, R. Grauer

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Tags: Computational Physics, CUDA, Maxwell's equations, nVidia, Physics, Plasma physics

June 23, 2014 by hgpu

The Power-Performance Tradeoffs of the Intel Xeon Phi on HPC Applications

Bo Li, Hung-Ching Chang, Shuaiwen Leon Song, Chun-Yi Su, Timmy Meyer, John Mooring, Kirk Cameron

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Tags: Computer science, Energy-efficient computing, Intel Xeon Phi, nVidia, Performance, Tesla C2050

June 22, 2014 by hgpu

The Fast and Wideband MoM Based on GPU and Two-Path AFS Acceleration

Lan Li, Jundong Tan, Zhuo Su, Yunliang Lon

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Tags: CUDA, Integral equations, nVidia, Signal processing, Tesla C2075

June 22, 2014 by hgpu

Solving the Caputo Fractional Reaction-Diffusion Equation on GPU

Jie Liu, Chunye Gong, Weimin Bao, Guojian Tang, Yuewen Jiang

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Tags: CUDA, Diffusion equation, Finite difference, nVidia, nVidia Quadro FX 5800, Physics

June 22, 2014 by hgpu

Real-Time Deformation of Subdivision Surfaces from Object Collisions

Henry Schafer, Benjamin Keinert, Matthias Niessner, Christoph Buchenau, Michael Guthe, Marc Stamminger

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Tags: 3D Graphics and Realism, Algorithms, Computer science, DirectX, HLSL, nVidia, nVidia GeForce GTX 780, Tessellation, Voxelization

June 22, 2014 by hgpu

Comparison of Random Number Generators in Particle Swarm Optimization Algorithm

Ke Ding, Ying Tan

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 560 Ti, Particle swarm optimization, Pseudo-random number generators

June 22, 2014 by hgpu

Acceleration of GPU-based ultrasound simulation via data compression

Andrew A. Haigh, Eric C. McCreath

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Tags: Acoustics, Compression, Computer science, CUDA, nVidia, nVidia GeForce GTX 580, Ultrasound

June 20, 2014 by hgpu

GPU based FDTD method for investigation on the electromagnetic scattering from 1-D rough soil surface

C.-G. Jia, L.-X. Guo, J. Li

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Tags: CUDA, Electrodynamics, FDTD, Finite-difference time-domain, nVidia, nVidia GeForce GTX 570, Physics

June 20, 2014 by hgpu

A Fast Mixed-Band Lifting Wavelet Transform on the GPU

Tran Minh Quan, Won-Ki Jeong

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Tags: Compression, CUDA, Discrete Wavelet Transform, Image processing, JPEG2000, MRI, nVidia, Sensing, Tesla M2090

June 20, 2014 by hgpu

MIC-SVM: Designing A Highly Efficient Support Vector Machine For Advanced Modern Multi-Core and Many-Core Architectures

Yang You, Shuaiwen Leon Song, Haohuan Fu, Andres Marquez, Guangwen Yang, Kevin Barker, Kirk W. Cameron, Maryam Mehri Dehnavi, Amanda Peters Randles

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Tags: Computer science, CUDA, Intel Xeon Phi, Machine learning, nVidia, Tesla K20, Vector Machine

June 20, 2014 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

An efficient parallel algorithm for accelerating computational protein design

A Scala Prototype to Generate Multigrid Solver Implementations for Different Problems and Target Multi-Core Platforms

Coupled Vlasov and two-fluid codes on GPUs

The Power-Performance Tradeoffs of the Intel Xeon Phi on HPC Applications

The Fast and Wideband MoM Based on GPU and Two-Path AFS Acceleration

Solving the Caputo Fractional Reaction-Diffusion Equation on GPU

Real-Time Deformation of Subdivision Surfaces from Object Collisions

Comparison of Random Number Generators in Particle Swarm Optimization Algorithm

Acceleration of GPU-based ultrasound simulation via data compression

GPU based FDTD method for investigation on the electromagnetic scattering from 1-D rough soil surface

A Fast Mixed-Band Lifting Wavelet Transform on the GPU

MIC-SVM: Designing A Highly Efficient Support Vector Machine For Advanced Modern Multi-Core and Many-Core Architectures

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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