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Migrating CUDA to oneAPI: A Smith-Waterman Case Study

Manuel Costanzo, Enzo Rucci, Carlos Garcia Sanchez, Marcelo Naiouf, Manuel Prieto-Matias

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Tags: Bioinformatics, Biology, CUDA, FPGA, Heterogeneous systems, nVidia, nVidia GeForce GTX Titan X, nVidia GeForce RTX 2070, Sequence alignment, Smith-Waterman algorithm, SYCL

March 27, 2022 by hgpu

Managing Extreme Heterogeneity in Next Generation HPC Systems

Harsh Khetawat

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Tags: Computer science, FPGA, Heterogeneous systems, Neural networks, nVidia, nVidia GeForce GTX 2060, OpenCL, Thesis

March 20, 2022 by hgpu

Electrical-Level Attacks on CPUs, FPGAs, and GPUs: Survey and Implications in the Heterogeneous Era

Dina G. Mahmoud, Vincent Lenders, Mirjana Stojilović

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Tags: Computer science, FPGA, Heterogeneous systems, Security, survey

February 13, 2022 by hgpu

Improving Loop Parallelization by a Combination of Static and Dynamic Analyses in HLS

Florian Dewald, Johanna Rohde, Christian Hochberger, Heiko Mantel

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Tags: Computer science, FPGA, HLS, Package

February 13, 2022 by hgpu

FC_ACCEL: Enabling Efficient, Low-Latency and Flexible Inference in DNN Fully Connected Layers, using Optimized Checkerboard Block matrix decomposition, fast scheduling, and a resource efficient 1D PE array with a custom HBM2 memory subsystem

Nick Iliev, Amit R Trivedi

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Tags: CNN, Computer science, Deep learning, FPGA, Matrix decomposition, Neural networks, nVidia, nVidia Jetson AGX Xavier, Performance

February 13, 2022 by hgpu

GenGNN: A Generic FPGA Framework for Graph Neural Network Acceleration

Stefan Abi-Karam, Yuqi He, Rishov Sarkar, Lakshmi Sathidevi, Zihang Qiao, Cong Hao

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Tags: Computer science, FPGA, Machine learning, Neural networks, nVidia, nVidia RTX A6000, Package

January 30, 2022 by hgpu

Multi-hetero Acceleration by GPU and FPGA for Astrophysics Simulation on oneAPI Environment

Ryuta Kashino, Ryohei Kobayashi, Norihisa Fujita, Taisuke Boku

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Tags: Astrophysics, CUDA, FPGA, Heterogeneous systems, nVidia, OpenCL, Physics, SYCL

January 23, 2022 by hgpu

Studying the Potential of Automatic Optimizations in the Intel FPGA SDK for OpenCL

Adel Ejjeh, Vikram Adve, Rob Rutenbar

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Tags: Computer science, Design space exploration, FPGA, HLS, OpenCL

January 16, 2022 by hgpu

CFU Playground: Full-Stack Open-Source Framework for Tiny Machine Learning (tinyML) Acceleration on FPGAs

Shvetank Prakash, Tim Callahan, Joseph Bushagour, Colby Banbury, Alan V. Green, Pete Warden, Tim Ansell, Vijay Janapa Reddi

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Tags: Computer science, Design space exploration, FPGA, Machine learning, Package

January 9, 2022 by hgpu

A Unified FPGA Virtualization Framework for General-Purpose Deep Neural Networks in the Cloud

Shulin Zeng, Guohao Dai, Hanbo Sun, Jun Liu, Shiyao Li, Guangjun Ge, Kai Zhong, Kaiyuan Guo, Yu Wang, Huazhong Yang

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Tags: Cloud, Computer science, CUDA, FPGA, Neural networks, nVidia, Tesla V100, Virtualization

January 2, 2022 by hgpu

FSpGEMM: An OpenCL-based HPC Framework for Accelerating General Sparse Matrix-Matrix Multiplication on FPGAs

Erfan Bank Tavakoli, Michael Riera, Masudul Hassan Quraishi, Fengbo Ren

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Tags: Algorithms, Computer science, FPGA, HPC, Linear Algebra, Matrix multiplication, nVidia, nVidia GTX Titan X, OpenCL, Sparse matrix

December 26, 2021 by hgpu

Optimization of Compiler-generated OpenCL CNN Kernels and Runtime for FPGAs

Seung-Hun Chung

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Tags: Computer science, FPGA, Neural networks, nVidia, nVidia GeForce GTX 1060, OpenCL, Performance, Thesis

December 19, 2021 by hgpu

Coccinelle: a C code transformation engine using SmPL for matches, refactorings, and bug fixing

Advances in Semantic Patching for HPC-oriented Refactorings with Coccinelle

DuoReduce: MLIR's benchmark

Hardware-Assisted Software Testing and Debugging for Heterogeneous Computing

Shamrock: Multi-GPU hydrodynamics for astrophysics

The Shamrock code: I- Smoothed Particle Hydrodynamics on GPUs

LLMPerf: GPU Performance Modeling meets Large Language Models

Hercules: A Compiler for Productive Programming of Heterogeneous Systems

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high performance computing on graphics processing units: hgpu.org

Migrating CUDA to oneAPI: A Smith-Waterman Case Study

Managing Extreme Heterogeneity in Next Generation HPC Systems

Electrical-Level Attacks on CPUs, FPGAs, and GPUs: Survey and Implications in the Heterogeneous Era

Improving Loop Parallelization by a Combination of Static and Dynamic Analyses in HLS

FC_ACCEL: Enabling Efficient, Low-Latency and Flexible Inference in DNN Fully Connected Layers, using Optimized Checkerboard Block matrix decomposition, fast scheduling, and a resource efficient 1D PE array with a custom HBM2 memory subsystem

GenGNN: A Generic FPGA Framework for Graph Neural Network Acceleration

Multi-hetero Acceleration by GPU and FPGA for Astrophysics Simulation on oneAPI Environment

Studying the Potential of Automatic Optimizations in the Intel FPGA SDK for OpenCL

CFU Playground: Full-Stack Open-Source Framework for Tiny Machine Learning (tinyML) Acceleration on FPGAs

FSpGEMM: An OpenCL-based HPC Framework for Accelerating General Sparse Matrix-Matrix Multiplication on FPGAs

Optimization of Compiler-generated OpenCL CNN Kernels and Runtime for FPGAs

Recent source codes

Coccinelle: a C code transformation engine using SmPL for matches, refactorings, and bug fixing

DuoReduce: MLIR's benchmark

Shamrock: Multi-GPU hydrodynamics for astrophysics

LLMPerf: GPU Performance Modeling meets Large Language Models

Hercules: A Compiler for Productive Programming of Heterogeneous Systems

Celerity Runtime: High-level C++ for Accelerator Clusters

wgpy: WebGL accelerated numpy-compatible array library for web browser

Microbenchmarking OpenMP target offload with Catch2

SUperman: Highly Efficient Permanent Computation Library

TransCL: An Automatic CUDA-to-OpenCL Programs Transformation Framework

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