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Assessing opportunities of SYCL for biological sequence alignment on GPU-based systems

Manuel Costanzo, Enzo Rucci, Carlos García-Sanchez, Marcelo Naiouf, Manuel Prieto-Matías

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Tags: AMD Radeon RX 6700 XT, AMD Radeon RX Vega 6, ATI, Bioinformatics, Biology, Computational biology, CUDA, Heterogeneous systems, Intel Arc A770, Intel UHD 630, nVidia, nVidia GeForce GTX 1080, nVidia GeForce GTX 980, nVidia GeForce RTX 2070, nVidia GeForce RTX 3090, nVidia V100, oneAPI, Package, Sequence alignment, SYCL

February 25, 2024 by hgpu

GPU-Smash: Compression abstraction library

A Parallel Compression Pipeline for Improving GPU Virtualization Data Transfers

Owl: Differential-based Side-Channel Leakage Detection for CUDA Applications

Owl: Differential-based Side-Channel Leakage Detection for CUDA Applications

pSTL-Bench: Micro-benchmark suite designed to evaluate the scalability and efficiency of parallel C++ STL implementations

Exploring Scalability in C++ Parallel STL Implementations

Noarr Structures

Abstractions for C++ code optimizations in parallel high-performance applications

$3D-fractal-generators$

3D-fractal-generators

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SyncPerformance

Characterizing CUDA and OpenMP Synchronization Primitives

VerCors: a verification toolset for verifying parallel and concurrent software

The VerCors Verifier: A Progress Report

HiCCL: A hierarchical collective communications library with portable optimizations

HiCCL: A Hierarchical Collective Communication Library

GRAFX: An Open-Source Library for Audio Processing Graphs in PyTorch

GRAFX: An Open-Source Library for Audio Processing Graphs in PyTorch

In-browser Inference Measurement

Anatomizing Deep Learning Inference in Web Browsers

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