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Comparing Performance and Portability between CUDA and SYCL for Protein Database Search on NVIDIA, AMD, and Intel GPUs

Manuel Costanzo, Enzo Rucci, Carlos García Sánchez, Marcelo Naiouf, Manuel Prieto-Matías

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Tags: AMD Radeon RX 6700 XT, ATI, Bioinformatics, Biology, Computer science, CUDA, Intel, Intel UHD 630, nVidia, nVidia GeForce GTX 1080, nVidia GeForce GTX 980, nVidia GeForce RTX 2070, nVidia GeForce RTX 3070, nVidia GeForce RTX 3090, oneAPI, Programming Languages, Smith-Waterman algorithm, SYCL, Tesla V100

September 24, 2023 by hgpu

Unified Shared Memory: Friend or Foe?

Juan Fumero Alfonso, Florin-Gabriel Blanaru, Athanasios Stratikopoulos, Steve Dohrmann, Sandhya Viswanathan, Christos-Efthymios Kotselidis

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Tags: Code generation, Computer science, CUDA, FPGA, Heterogeneous systems, Java, Memory, nVidia, nVidia GeForce RTX 3070, OpenCL

September 17, 2023 by hgpu

Genomics-GPU: A Benchmark Suite for GPU-accelerated Genome Analysis

Zhuren Liu, Shouzhe Zhang, Justin Garrigus, Hui Zhao

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Tags: Benchmarking, Bioinformatics, Biology, Computer science, CUDA, Genomics, nVidia, nVidia GeForce RTX 3070, Package

May 28, 2023 by hgpu

ACRoBat: Optimizing Auto-batching of Dynamic Deep Learning at Compile Time

Pratik Fegade, Tianqi Chen, Phillip B. Gibbons, Todd C. Mowry

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Tags: Code generation, Computer science, CUDA, Deep learning, nVidia, nVidia GeForce RTX 3070

May 28, 2023 by hgpu

Improving the scalability of modern applications by parallel multi-core and many-core programming

Alessandro Borione

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Tags: Algorithms, Computer science, CUDA, Graph theory, nVidia, nVidia GeForce RTX 3070, OpenCL, Thesis

January 15, 2023 by hgpu

GPU-accelerated Faster Mean Shift with euclidean distance metrics

Le You, Han Jiang, Jinyong Hu, Chorng Chang, Lingxi Chen, Xintong Cui, Mengyang Zhao

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Tags: Algorithms, Clustering, CUDA, Image processing, nVidia, nVidia GeForce RTX 3070, nVidia GeForce RTX 3080 Ti, nVidia Quadro P 5000, Package, Pattern recognition, Tesla P100

January 2, 2022 by hgpu

Performance Study of GPU-based Joins

Efficiently Processing Large Relational Joins on GPUs

GenVectorX: A performance-portable SYCL library for Lorentz Vectors operations

bib boi: Tools to help with LaTeX paper writing

Compiler-centric across-stack deep learning acceleration

Kernel Tuner

Testing and Mutation Testing for GPU Kernels

CuPBoP-AMD: Extending CUDA to AMD Platforms

Creating a Dataset for High-Performance Computing Code Translation using LLMs: A Bridge Between OpenMP Fortran and C+

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high performance computing on graphics processing units: hgpu.org

Comparing Performance and Portability between CUDA and SYCL for Protein Database Search on NVIDIA, AMD, and Intel GPUs

Unified Shared Memory: Friend or Foe?

Genomics-GPU: A Benchmark Suite for GPU-accelerated Genome Analysis

ACRoBat: Optimizing Auto-batching of Dynamic Deep Learning at Compile Time

Improving the scalability of modern applications by parallel multi-core and many-core programming

GPU-accelerated Faster Mean Shift with euclidean distance metrics

Recent source codes

Performance Study of GPU-based Joins

GenVectorX: A performance-portable SYCL library for Lorentz Vectors operations

bib boi: Tools to help with LaTeX paper writing

Kernel Tuner

CuPBoP-AMD: Extending CUDA to AMD Platforms

gossip: Efficient Communication Primitives for Multi-GPU Systems

GT4Py: GridTools for Python

miniBUDE: A BUDE virtual-screening benchmark, in many programming models

AUCMEDI: a framework for Automated Classification of Medical Images

Creating a Dataset for High-Performance Computing Code Translation using LLMs: A Bridge Between OpenMP Fortran and C+

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