high performance computing on graphics processing units: hgpu.org

Tommaso Biagini, Giovanni Chillemi, Gianluigi Mazzoccoli, Alessandro Grottesi, Caterina Fusilli, Daniele Capocefalo, Stefano Castellana, Angelo Luigi Vescovi, Tommaso Mazza

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Tags: Benchmarking, Bioinformatics, Biology, Chemistry, CUDA, Genomics, Molecular dynamics, nVidia, OpenCL, Physics, Tesla C2070

December 19, 2017 by hgpu

Accelerated Sparse Matrix Operations in Nonlinear Least Squares Solvers

Lukas Polok

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Tags: Algorithms, Computer science, Differential equations, Factorization, FEM, Finite element method, Linear Algebra, nVidia, nVidia GeForce GTX 680, OpenCL, Partial differential equations, PDEs, Sparse matrix, Tesla K40, Thesis

December 19, 2017 by hgpu

OpenCL-accelerated Point Feature Histogram and Its Application in Railway Track Point Cloud Data Processing

Dongxu Lv, Peijun Wang, Wentao Li, Peng Chen

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Tags: Algorithms, AMD Radeon R7 260, ATI, Computer science, OpenCL

December 19, 2017 by hgpu

Tactics to Directly Map CNN graphs on Embedded FPGAs

Kamel Abdelouahab, Maxime Pelcat, Cedric Bourrasset, Francois Berry, Jocelyn Serot

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Tags: Caffe, Computer science, Deep learning, FPGA, Neural networks, Package

December 19, 2017 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

See all packages

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high performance computing on graphics processing units: hgpu.org

Applications

A Generic Inverted Index Framework for Similarity Search on the GPU

A Survey of FPGA Based Neural Network Accelerator

Protecting Real-Time GPU Applications on Integrated CPU-GPU SoC Platforms

Extending OmpSs for OpenCL kernel co-execution in heterogeneous systems

Pass a Pointer: Exploring Shared Virtual Memory Abstractions in OpenCL Tools for FPGAs

An MPI-Based Python Framework for Distributed Training with Keras

An In-depth Performance Characterization of CPU- and GPU-based DNN Training on Modern Architectures

GAMER-2: a GPU-accelerated adaptive mesh refinement code — accuracy, performance, and scalability

Molecular dynamics recipes for genome research

Accelerated Sparse Matrix Operations in Nonlinear Least Squares Solvers

OpenCL-accelerated Point Feature Histogram and Its Application in Railway Track Point Cloud Data Processing

Tactics to Directly Map CNN graphs on Embedded FPGAs

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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