high performance computing on graphics processing units: hgpu.org

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BarraCUDA – a fast short read sequence aligner using graphics processing units

Petr Klus, Simon Lam, Dag Lyberg, Ming Sin Cheung, Graham Pullan, Ian McFarlane, Giles S. H. Yeo, Brian Y. H. Lam

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Tags: Bioinformatics, Biology, CUDA, nVidia, Package, Sequence alignment, Tesla M2050, Tesla M2090

January 13, 2012 by hgpu

Parallel mutual information estimation for inferring gene regulatory networks on GPUs

Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang Muller-Wittig

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Tags: Algorithms, Biology, Computational biology, CUDA, Image processing, Machine learning, nVidia, Package, Tesla C2050

January 13, 2012 by hgpu

MetaBinG: Using GPUs to Accelerate Metagenomic Sequence Classification

Peng Jia, Liming Xuan, Lei Liu, Chaochun Wei

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Tags: Biology, Computational biology, CUDA, Genetics, nVidia, Package, Tesla C1060

January 11, 2012 by hgpu

Report on the Feasibility of Implementing PIC Codes on a GPU

Joshua Payne

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Tags: CUDA, nVidia, nVidia GeForce GTX 470, Package, Physics, Plasma physics

January 7, 2012 by hgpu

CodePy

Martin Kempf

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Tags: Code generation, Computer science, CUDA, nVidia, Package, Python

January 6, 2012 by hgpu

A GPU Implementation of Inclusion-based Points-to Analysis

Mario Mendez-Lojo, Martin Burtscher, Keshav Pingali

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Tags: Algorithms, Computer science, CUDA, Graph theory, nVidia, Package, Performance, Programming techniques, Tesla C2070

January 5, 2012 by hgpu

Implementation of Keccak hash function in Tree hashing mode on Nvidia GPU

Guillaume Sevestre

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Tags: Computer science, CUDA, Hashing, nVidia, nVidia GeForce GTS 250, nVidia Quadro FX 370 M, Optimization, Package, Security, Stream Ciphers

January 5, 2012 by hgpu

Thermal and Athermal Swarms of Self-Propelled Particles

Nguyen Nguyen, Eric Jankowski, Sharon C. Glotzer

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Tags: Computational Physics, Condensed matter, CUDA, nVidia, Package, Physics, Probability, Soft Condensed Matter, Tesla S1070

January 4, 2012 by hgpu

Augmenting Operating Systems With the GPU

Weibin Sun, Robert Ricci

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Tags: Computer science, CUDA, Heterogeneous systems, nVidia, nVidia GeForce GTX 480, Operating systems, Package

January 2, 2012 by hgpu

Efficient Triangle and Quadrilateral Clipping within Shaders

M. McGuire

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Tags: Algorithms, Computer science, GLSL, nVidia, nVidia GeForce GTX 580, OpenGL, Optimization, Package, Rasterization

December 31, 2011 by hgpu

Fast Speaker Diarization Using a Specialization Framework for Gaussian Mixture Model Training

Ekaterina Gonina

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Tags: Acoustics, Algorithms, Clustering, Computer science, CUDA, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 480, Package, Python, Thesis

December 31, 2011 by hgpu

Fast K-selection Algorithms for Graphics Processing Units

Tolu Alabi, Jeffrey D. Blanchard, Bradley Gordon, Russel Steinbach

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Tags: Algorithms, Computer science, CUDA, Mathematical Software, nVidia, Package, Sorting, Tesla C2070

December 31, 2011 by hgpu

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Accelerating a Linear Programming Algorithm on AMD GPUs

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

kvcached: Elastic KV cache for dynamic GPU sharing and efficient multi-LLM inference

Towards Efficient and Practical GPU Multitasking in the Era of LLM

Bandicoot: C++ library for GPU accelerated linear algebra

Bandicoot: A Templated C++ Library for GPU Linear Algebra

Luthier: Bridging Auto-Tuning and Vendor Libraries for Efficient Deep Learning Inference

Fused Kernel Library (FKL)

The Fused Kernel Library: A C++ API to Develop Highly-Efficient GPU Libraries

GPUHammer: Rowhammer Attacks on GPU Memories are Practical

Block: Balance Loader of LLM Serving with Context, Knowledge and Predictive Scheduling

Block: Balancing Load in LLM Serving with Context, Knowledge and Predictive Scheduling

SIGMo: Scalable Isomorphism Graph Matching on GPUs

SIGMo: High-Throughput Batched Subgraph Isomorphism on GPUs for Molecular Matching

DGEMM without FP64 Arithmetic - using FP64 Emulation and FP8 Tensor Cores with Ozaki Scheme

DGEMM without FP64 Arithmetic – using FP64 Emulation and FP8 Tensor Cores with Ozaki Scheme

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high performance computing on graphics processing units: hgpu.org

BarraCUDA – a fast short read sequence aligner using graphics processing units

Parallel mutual information estimation for inferring gene regulatory networks on GPUs

MetaBinG: Using GPUs to Accelerate Metagenomic Sequence Classification

Report on the Feasibility of Implementing PIC Codes on a GPU

CodePy

A GPU Implementation of Inclusion-based Points-to Analysis

Implementation of Keccak hash function in Tree hashing mode on Nvidia GPU

Thermal and Athermal Swarms of Self-Propelled Particles

Augmenting Operating Systems With the GPU

Efficient Triangle and Quadrilateral Clipping within Shaders

Fast Speaker Diarization Using a Specialization Framework for Gaussian Mixture Model Training

Fast K-selection Algorithms for Graphics Processing Units

Recent source codes

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

kvcached: Elastic KV cache for dynamic GPU sharing and efficient multi-LLM inference

Bandicoot: C++ library for GPU accelerated linear algebra

Luthier: Bridging Auto-Tuning and Vendor Libraries for Efficient Deep Learning Inference

Fused Kernel Library (FKL)

GPUHammer: Rowhammer Attacks on GPU Memories are Practical

Block: Balance Loader of LLM Serving with Context, Knowledge and Predictive Scheduling

SIGMo: Scalable Isomorphism Graph Matching on GPUs

DGEMM without FP64 Arithmetic - using FP64 Emulation and FP8 Tensor Cores with Ozaki Scheme

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