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Fast and Flexible GPU Accelerated Binding Free Energy Calculations within the AMBER Molecular Dynamics Package

Daniel J. Mermelstein, Charles Lin, Gard Nelson, Rachael Kretsch, J. Andrew McCammon, Ross C. Walker

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Tags: Algorithms, Bioinformatics, Biology, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 1080 Ti, nVidia GeForce GTX Titan X

January 20, 2018 by hgpu

Evaluation of Machine Learning Fameworks on Finis Terrae II

Andres Gomez Tato

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Tags: Algorithms, Benchmarking, Computer science, CUDA, Deep learning, Machine learning, nVidia, Performance, Tesla K80

January 20, 2018 by hgpu

ImageCL: Language and source-to-source compiler for performance portability, load balancing, and scalability prediction on heterogeneous systems

Thomas L. Falch, Anne C. Elster

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Tags: ATI, ATI Radeon HD 7970, Compilers, Heterogeneous systems, Image processing, Machine learning, nVidia, nVidia GeForce GTX 960, OpenCL, Package, performance portability, Tesla K40

January 13, 2018 by hgpu

Graph Processing on GPUs: A Survey

Xuanhua Shi, Zhigao Zheng, Yongluan Zhou, Hai Jin, Ligang He, Bo Liu, Qiang-Sheng Hua

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Tags: Computer science, CUDA, Graph theory, nVidia, OpenCL, survey

January 13, 2018 by hgpu

pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment

Sven Warris, N. Roshan N. Timal, Marcel Kempenaar, Arne M. Poortinga, Henri van de Geest, Ana L. Varbanescu, Jan-Peter Nap

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 1070, OpenCL, Package, Python, Sequence alignment, Smith-Waterman algorithm

January 13, 2018 by hgpu

High Performance Stencil Code Generation with Lift

Bastian Hagedorn, Larisa Stoltzfus, Michel Steuwer, Sergei Gorlatch, Christophe Dubach

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Tags: ARM, ATI, ATI Radeon HD 7970, Code generation, Compilers, Computer science, Linear Algebra, nVidia, OpenCL, Package, performance portability, Scala, Tesla K20

January 13, 2018 by hgpu

Deep In-GPU Experience Replay

Ben Parr

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Tags: Artificial intelligence, Computer science, nVidia, nVidia GeForce GTX Titan X

January 13, 2018 by hgpu

GPU Acceleration of a High-Order Discontinuous Galerkin Incompressible Flow Solver

Ali Karakus, Noel Chalmers, Kasia Swirydowicz, Timothy Warburton

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Tags: Computational Physics, CUDA, Fluid dynamics, Navier-Stokes equations, NSEs, Numerical Analysis, nVidia, Tesla P100

January 6, 2018 by hgpu

Rubus: A compiler for seamless and extensible parallelism

Muhammad Adnan, Faisal Aslam, Zubair Nawaz, Syed Mansoor Sarwar

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Tags: Aparapi, Benchmarking, Computer science, CUDA, Java, Matrix multiplication, nVidia, nVidia GeForce GT 630 M, OpenCL, OpenGL, Package

January 6, 2018 by hgpu

ThunderSVM: A Fast SVM Library on GPUs and CPUs

Zeyi Wen, Jiashuai Shi, Bingsheng He, Qinbin Li, Jian Chen

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Tags: Computer science, CUDA, Data mining, Machine learning, nVidia, OpenMP, Package, Tesla P100

January 6, 2018 by hgpu

Scaling GRPC Tensorflow on 512 nodes of Cori Supercomputer

Amrita Mathuriya, Thorsten Kurth, Vivek Rane, Mustafa Mustafa, Lei Shao, Debbie Bard, Prabhat, Victor W Lee

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Tags: Benchmarking, Computer science, Deep learning, Intel Xeon Phi, Neural networks, Performance, TensorFlow

January 6, 2018 by hgpu

Analysing the Performance of GPU Hash Tables for State Space Exploration

Nathan Cassee, Anton Wijs

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Tags: Computer science, CUDA, Design space exploration, Hashing, nVidia, nVidia GeForce GT 750 M, Performance

January 6, 2018 by hgpu

Agentic Code Optimization via Compiler-LLM Cooperation

MegaTrain: Full Precision Training of 100B+ Parameter Large Language Models on a Single GPU

Device Virtual Machine (DVM)

DVM: Real-Time Kernel Generation for Dynamic AI Models

AutoKernel: Autoresearch for GPU kernels. Give it any PyTorch model, go to sleep, wake up to optimized Triton kernels

AutoKernel: Autonomous GPU Kernel Optimization via Iterative Agent-Driven Search

Triton-Sanitizer: A Fast and Device-Agnostic Memory Sanitizer for Triton with Rich Diagnostic Context

LLM.Q: Quantized LLM training in pure CUDA/C++

LLMQ: Efficient Lower-Precision LLM Training for Consumer GPUs

SOL-ExecBench: Speed-of-Light Benchmarking for Real-World GPU Kernels Against Hardware Limits

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high performance computing on graphics processing units: hgpu.org

Applications

Fast and Flexible GPU Accelerated Binding Free Energy Calculations within the AMBER Molecular Dynamics Package

Evaluation of Machine Learning Fameworks on Finis Terrae II

ImageCL: Language and source-to-source compiler for performance portability, load balancing, and scalability prediction on heterogeneous systems

Graph Processing on GPUs: A Survey

pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment

High Performance Stencil Code Generation with Lift

Deep In-GPU Experience Replay

GPU Acceleration of a High-Order Discontinuous Galerkin Incompressible Flow Solver

Rubus: A compiler for seamless and extensible parallelism

ThunderSVM: A Fast SVM Library on GPUs and CPUs

Scaling GRPC Tensorflow on 512 nodes of Cori Supercomputer

Analysing the Performance of GPU Hash Tables for State Space Exploration

Recent source codes

Agentic Code Optimization via Compiler-LLM Cooperation

MegaTrain: Full Precision Training of 100B+ Parameter Large Language Models on a Single GPU

Device Virtual Machine (DVM)

AutoKernel: Autoresearch for GPU kernels. Give it any PyTorch model, go to sleep, wake up to optimized Triton kernels

Triton-Sanitizer: A Fast and Device-Agnostic Memory Sanitizer for Triton with Rich Diagnostic Context

LLM.Q: Quantized LLM training in pure CUDA/C++

SOL-ExecBench: Speed-of-Light Benchmarking for Real-World GPU Kernels Against Hardware Limits

True 4-Bit Quantized CNN Training on CPU

cuFuzz: A GPU-oriented coverage-guided fuzzer for userland CUDA application

KernelSkill: A Multi-Agent Framework for GPU Kernel Optimization

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