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Comparison of different n-body algorithms on various hardware platforms using SYCL

Tim Thüring

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Tags: AMD Radeon Pro VII, Astrophysics, ATI, Computer science, N-body simulation, nVidia, nVidia A100, nVidia GeForce RTX 3090, nVidia Quadro GP100, Package, Physics, SYCL, Thesis

October 15, 2023 by hgpu

Comparing Performance and Portability between CUDA and SYCL for Protein Database Search on NVIDIA, AMD, and Intel GPUs

Manuel Costanzo, Enzo Rucci, Carlos García Sánchez, Marcelo Naiouf, Manuel Prieto-Matías

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Tags: AMD Radeon RX 6700 XT, ATI, Bioinformatics, Biology, Computer science, CUDA, Intel, Intel UHD 630, nVidia, nVidia GeForce GTX 1080, nVidia GeForce GTX 980, nVidia GeForce RTX 2070, nVidia GeForce RTX 3070, nVidia GeForce RTX 3090, oneAPI, Programming Languages, Smith-Waterman algorithm, SYCL, Tesla V100

September 24, 2023 by hgpu

A portable C++ library for memory and compute abstraction on multi-core CPUs and GPUs

Pietro Incardona, Aryaman Gupta, Serhii Yaskovets, Ivo F. Sbalzarini

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Tags: AMD RX Vega 64, ATI, Computer science, CUDA, nVidia, nVidia A100, nVidia GeForce RTX 3090, OpenACC, OpenCL, OpenMP, Package, Performance, performance portability, SYCL

July 30, 2023 by hgpu

Towards a Benchmarking Suite for Kernel Tuners

Jacob O. Tørring, Ben van Werkhoven, Filip Petrovic, Floris-Jan Willemsen, Jirí Filipovic, Anne C. Elster

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Tags: Auto-Tuning, Benchmarking, Computer science, CUDA, nVidia, nVidia GeForce RTX 2080 Ti, nVidia GeForce RTX 3060, nVidia GeForce RTX 3090, nVidia Titan RTX, Package, performance portability

March 19, 2023 by hgpu

SaLoBa: Maximizing Data Locality and Workload Balance for Fast Sequence Alignment on GPUs

Seongyeon Park, Hajin Kim, Tanveer Ahmad, Nauman Ahmed, Zaid Al-Ars, H. Peter Hofstee, Youngsok Kim, Jinho Lee

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Tags: Bioinformatics, Biology, CUDA, Databases, nVidia, nVidia GeForce GTX 1650, nVidia GeForce RTX 3090, Sequence alignment, Smith-Waterman algorithm, String matching

January 29, 2023 by hgpu

PIGEON: Optimizing CUDA Code Generator for End-to-End Training and Inference of Relational Graph Neural Networks

Kun Wu, Mert Hidayetoğlu, Xiang Song, Sitao Huang, Da Zheng, Israt Nisa, Wen-mei Hwu

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Tags: Code generation, Computer science, CUDA, Heterogeneous systems, Neural networks, nVidia, nVidia GeForce RTX 3090

January 22, 2023 by hgpu

Assessing Opportunities of SYCL and Intel oneAPI for Biological Sequence Alignment

Manuel Costanzo, Enzo Rucci, Carlos García Sánchez, Marcelo Naiouf, Manuel Prieto-Matías

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Tags: Bioinformatics, Biology, Computational biology, Computer science, CUDA, Heterogeneous systems, Intel, Intel UHD 630, nVidia, nVidia GeForce GTX 1080, nVidia GeForce GTX 980, nVidia GeForce RTX 2070, nVidia GeForce RTX 3090, OpenCL, Sequence alignment, SYCL, Tesla V100

November 27, 2022 by hgpu

Sgap: Towards Efficient Sparse Tensor Algebra Compilation for GPU

Genghan Zhang, Yuetong Zhao, Yanting Tao, Zhongming Yu, Guohao Dai, Sitao Huang, Yuan Wen, Pavlos Petoumenos, Yu Wang

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Tags: Computer science, CUDA, Matrix multiplication, nVidia, nVidia GeForce RTX 2080, nVidia GeForce RTX 3090, Package, Sparse matrix, Tesla V100

September 11, 2022 by hgpu

Enhancing the Performance Portability of Heterogeneous Circuit Analysis Programs

Tsung-Wei Huang

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Tags: AMD Radeon RX 6900 XT, ATI, Computer science, Deep learning, nVidia, nVidia GeForce RTX 3090, OpenCL, performance portability, PyTorch, SYCL

September 11, 2022 by hgpu

tntorch: Tensor Network Learning with PyTorch

Mikhail Usvyatsov, Rafael Ballester-Ripoll, Konrad Schindler

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Tags: Computer science, Deep learning, nVidia, nVidia GeForce RTX 3090, Package, Python, PyTorch

June 26, 2022 by hgpu

AnySeq/GPU: A Novel Approach for Faster Sequence Alignment on GPUs

André Müller, Bertil Schmidt, Richard Membarth, Roland Leißa, Sebastian Hack

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Tags: AMD Radeon Instinct MI100, ATI, Bioinformatics, Biology, CUDA, Next-Generation sequencing, nVidia, nVidia GeForce RTX 3090, OpenCL, Package, Sequence alignment, Tesla A100

May 22, 2022 by hgpu

Heuristic Adaptability to Input Dynamics for SpMM on GPUs

Guohao Dai, Guyue Huang, Shang Yang, Zhongming Yu, Hengrui Zhang, Yufei Ding, Yuan Xie, Huazhong Yang, Yu Wang

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Tags: Algorithms, CUDA, Matrix multiplication, Neural networks, nVidia, nVidia GeForce RTX 2080, nVidia GeForce RTX 3090, Package, Sparse matrix, Tesla V100

February 20, 2022 by hgpu

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

CUDA-L2: Surpassing cuBLAS Performance for Matrix Multiplication through Reinforcement Learning

BoltzGen:Toward Universal Binder Design

cuPilot: A Strategy-Coordinated Multi-agent Framework for CUDA Kernel Evolution

MATLAB Tensor Core models

Accurate Models of NVIDIA Tensor Cores

TritonForge: Transform PyTorch Operations into Optimized GPU Kernels with LLMs

TritonForge: Profiling-Guided Framework for Automated Triton Kernel Optimization

RLTune: Hybrid Learning and Optimization-Based Dynamic Scheduling for DL Workloads on Heterogeneous GPU Clusters

Hybrid Learning and Optimization-Based Dynamic Scheduling for DL Workloads on Heterogeneous GPU Clusters

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high performance computing on graphics processing units: hgpu.org

Comparison of different n-body algorithms on various hardware platforms using SYCL

Comparing Performance and Portability between CUDA and SYCL for Protein Database Search on NVIDIA, AMD, and Intel GPUs

A portable C++ library for memory and compute abstraction on multi-core CPUs and GPUs

Towards a Benchmarking Suite for Kernel Tuners

SaLoBa: Maximizing Data Locality and Workload Balance for Fast Sequence Alignment on GPUs

PIGEON: Optimizing CUDA Code Generator for End-to-End Training and Inference of Relational Graph Neural Networks

Assessing Opportunities of SYCL and Intel oneAPI for Biological Sequence Alignment

Sgap: Towards Efficient Sparse Tensor Algebra Compilation for GPU

Enhancing the Performance Portability of Heterogeneous Circuit Analysis Programs

tntorch: Tensor Network Learning with PyTorch

AnySeq/GPU: A Novel Approach for Faster Sequence Alignment on GPUs

Heuristic Adaptability to Input Dynamics for SpMM on GPUs

Recent source codes

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

CUDA-L2: Surpassing cuBLAS Performance for Matrix Multiplication through Reinforcement Learning

BoltzGen:Toward Universal Binder Design

cuPilot: A Strategy-Coordinated Multi-agent Framework for CUDA Kernel Evolution

MATLAB Tensor Core models

TritonForge: Transform PyTorch Operations into Optimized GPU Kernels with LLMs

RLTune: Hybrid Learning and Optimization-Based Dynamic Scheduling for DL Workloads on Heterogeneous GPU Clusters

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