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Accelerating AutoDock VINA with GPUs

Shidi Tang, Ruiqi Chen, Mengru Lin, Qingde Lin, Yanxiang Zhu, Jiansheng Wu, Haifeng Hu, Ming Ling

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Tags: Chemistry, Databases, Heterogeneous systems, molecular docking, nVidia, nVidia GeForce GTX 1060, nVidia GeForce RTX 2080 Ti, nVidia GeForce RTX 3090, OpenCL, Package

October 17, 2021 by hgpu

High Performance GPU Code Generation for Matrix-Matrix Multiplication using MLIR: Some Early Results

Navdeep Katel, Vivek Khandelwal, Uday Bondhugula

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Tags: Code generation, Computer science, CUBLAS, CUDA, HPC, Matrix multiplication, nVidia, nVidia GeForce RTX 3090, Package

September 5, 2021 by hgpu

Performance Portability and Evaluation of Heterogeneous Components of SeisSol Targeted to Upcoming Intel HPC GPUs

Ludwig Kratzl

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Tags: Computer science, CUDA, FPGA, Heterogeneous systems, Intel, Intel UHD 630, MPI, nVidia, nVidia GeForce RTX 3090, OpenCL, Package, performance portability, SYCL, Thesis

August 29, 2021 by hgpu

ndzip-gpu: Efficient Lossless Compression of Scientific Floating-Point Data on GPUs

Fabian Knorr, Peter Thoman, Thomas Fahringer

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Tags: Compression, Computer science, CUDA, nVidia, nVidia GeForce RTX 2070, nVidia GeForce RTX 3090, Package, SYCL, Tesla V100

August 8, 2021 by hgpu

APNN-TC: Accelerating Arbitrary Precision Neural Networks on Ampere GPU Tensor Cores

Boyuan Feng, Yuke Wang, Tong Geng, Ang Li, Yufei Ding

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Tags: Algorithms, Computer science, CUDA, Deep learning, Neural networks, nVidia, nVidia GeForce RTX 3090, Package, Precision, Python, Tesla A100

June 27, 2021 by hgpu

CLUEstering: a high-performance density-based clustering library for scientific computing

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high performance computing on graphics processing units: hgpu.org

Accelerating AutoDock VINA with GPUs

High Performance GPU Code Generation for Matrix-Matrix Multiplication using MLIR: Some Early Results

Performance Portability and Evaluation of Heterogeneous Components of SeisSol Targeted to Upcoming Intel HPC GPUs

ndzip-gpu: Efficient Lossless Compression of Scientific Floating-Point Data on GPUs

APNN-TC: Accelerating Arbitrary Precision Neural Networks on Ampere GPU Tensor Cores

Recent source codes

CLUEstering: a high-performance density-based clustering library for scientific computing

PyOMP: OpenMP for Python in Numba

HiRep

GPPerf: Energy-Aware GPU Performance Prediction and Optimization Framework

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

Gaia AVU-GSR

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

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